Genomics
Transcript | Exons | Introns | ||||||||||
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RDR6
AT3G49500.2
4022 |
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RDR6
AT3G49500.5
4031 |
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RDR6
AT3G49500.1
4015 |
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RDR6
AT3G49500.4
4038 |
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RDR6
AT3G49500.3
4271 |
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Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G49500:CDS:2 | 876 | Chr3: 18349193-18350068 | Arabidopsis thaliana |
AT3G49500:CDS:1 | 2715 | Chr3: 18350491-18353205 | Arabidopsis thaliana |
AT3G49500:CDS:2.1 | 876 | Chr3: 18349193-18350068 | Arabidopsis thaliana |
AT3G49500:CDS:1.1 | 2715 | Chr3: 18350491-18353205 | Arabidopsis thaliana |
AT3G49500:CDS:2.2 | 876 | Chr3: 18349193-18350068 | Arabidopsis thaliana |
AT3G49500:CDS:1.2 | 2715 | Chr3: 18350491-18353205 | Arabidopsis thaliana |
AT3G49500:CDS:2.3 | 876 | Chr3: 18349193-18350068 | Arabidopsis thaliana |
AT3G49500:CDS:1.3 | 2715 | Chr3: 18350491-18353205 | Arabidopsis thaliana |
AT3G49500:CDS:2.4 | 876 | Chr3: 18349193-18350068 | Arabidopsis thaliana |
AT3G49500:CDS:1.4 | 2715 | Chr3: 18350491-18353205 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G49500:exon:8 | 1095 | Chr3: 18348974-18350068 | Arabidopsis thaliana |
AT3G49500:exon:3 | 191 | Chr3: 18353444-18353634 | Arabidopsis thaliana |
AT3G49500:exon:5 | 2736 | Chr3: 18350491-18353226 | Arabidopsis thaliana |
AT3G49500:exon:1 | 207 | Chr3: 18353467-18353673 | Arabidopsis thaliana |
AT3G49500:exon:6 | 2720 | Chr3: 18350491-18353210 | Arabidopsis thaliana |
AT3G49500:exon:2 | 230 | Chr3: 18353444-18353673 | Arabidopsis thaliana |
AT3G49500:exon:7 | 1088 | Chr3: 18348981-18350068 | Arabidopsis thaliana |
AT3G49500:exon:4 | 3183 | Chr3: 18350491-18353673 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G49500:five_prime_UTR:3 | 191 | Chr3: 18353444-18353634 | Arabidopsis thaliana |
AT3G49500:five_prime_UTR:5 | 21 | Chr3: 18353206-18353226 | Arabidopsis thaliana |
AT3G49500:five_prime_UTR:1 | 207 | Chr3: 18353467-18353673 | Arabidopsis thaliana |
AT3G49500:five_prime_UTR:6 | 5 | Chr3: 18353206-18353210 | Arabidopsis thaliana |
AT3G49500:five_prime_UTR:2 | 230 | Chr3: 18353444-18353673 | Arabidopsis thaliana |
AT3G49500:five_prime_UTR:4 | 468 | Chr3: 18353206-18353673 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G49500 | locus:2114633 | RDR6 | RNA-dependent RNA polymerase 6 | 4700 | Chr3: 18348974-18353673 | A. thaliana | RNA-dependent RNA polymerase 6;(source:Araport11) | Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance.Loss of function mutants produce ectopic megaspore mother cell and supernumary female gametophytes. | RNA-dependent RNA polymerase 6 | AtRDR6, RDR6, SDE1, SGS2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G49500.2 | 4022 | Chr3: 18348974-18353634 |
AT3G49500.5 | 4031 | Chr3: 18348981-18353673 |
AT3G49500.1 | 4015 | Chr3: 18348981-18353673 |
AT3G49500.4 | 4038 | Chr3: 18348981-18353673 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G49500:three_prime_UTR:2 | 219 | Chr3: 18348974-18349192 | Arabidopsis thaliana |
AT3G49500:three_prime_UTR:1 | 212 | Chr3: 18348981-18349192 | Arabidopsis thaliana |