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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G48860:CDS:3 | 122 | Chr3: 18118200-18118321 | Arabidopsis thaliana |
AT3G48860:CDS:4 | 76 | Chr3: 18118612-18118687 | Arabidopsis thaliana |
AT3G48860:CDS:5 | 42 | Chr3: 18118816-18118857 | Arabidopsis thaliana |
AT3G48860:CDS:6 | 63 | Chr3: 18118940-18119002 | Arabidopsis thaliana |
AT3G48860:CDS:7 | 50 | Chr3: 18119227-18119276 | Arabidopsis thaliana |
AT3G48860:CDS:8 | 28 | Chr3: 18119378-18119405 | Arabidopsis thaliana |
AT3G48860:CDS:9 | 75 | Chr3: 18119513-18119587 | Arabidopsis thaliana |
AT3G48860:CDS:10 | 111 | Chr3: 18119678-18119788 | Arabidopsis thaliana |
AT3G48860:CDS:11 | 61 | Chr3: 18119876-18119936 | Arabidopsis thaliana |
AT3G48860:CDS:12 | 117 | Chr3: 18120097-18120213 | Arabidopsis thaliana |
AT3G48860:CDS:13 | 113 | Chr3: 18120303-18120415 | Arabidopsis thaliana |
AT3G48860:CDS:14 | 70 | Chr3: 18120515-18120584 | Arabidopsis thaliana |
AT3G48860:CDS:15 | 42 | Chr3: 18120771-18120812 | Arabidopsis thaliana |
AT3G48860:CDS:17 | 41 | Chr3: 18121153-18121193 | Arabidopsis thaliana |
AT3G48860:CDS:18 | 133 | Chr3: 18121475-18121607 | Arabidopsis thaliana |
AT3G48860:CDS:19 | 128 | Chr3: 18121726-18121853 | Arabidopsis thaliana |
AT3G48860:CDS:1 | 396 | Chr3: 18117619-18118014 | Arabidopsis thaliana |
AT3G48860:CDS:2 | 188 | Chr3: 18118134-18118321 | Arabidopsis thaliana |
AT3G48860:CDS:4.1 | 76 | Chr3: 18118612-18118687 | Arabidopsis thaliana |
AT3G48860:CDS:5.1 | 42 | Chr3: 18118816-18118857 | Arabidopsis thaliana |
AT3G48860:CDS:6.1 | 63 | Chr3: 18118940-18119002 | Arabidopsis thaliana |
AT3G48860:CDS:7.1 | 50 | Chr3: 18119227-18119276 | Arabidopsis thaliana |
AT3G48860:CDS:8.1 | 28 | Chr3: 18119378-18119405 | Arabidopsis thaliana |
AT3G48860:CDS:9.1 | 75 | Chr3: 18119513-18119587 | Arabidopsis thaliana |
AT3G48860:CDS:10.1 | 111 | Chr3: 18119678-18119788 | Arabidopsis thaliana |
AT3G48860:CDS:11.1 | 61 | Chr3: 18119876-18119936 | Arabidopsis thaliana |
AT3G48860:CDS:12.1 | 117 | Chr3: 18120097-18120213 | Arabidopsis thaliana |
AT3G48860:CDS:13.1 | 113 | Chr3: 18120303-18120415 | Arabidopsis thaliana |
AT3G48860:CDS:14.1 | 70 | Chr3: 18120515-18120584 | Arabidopsis thaliana |
AT3G48860:CDS:15.1 | 42 | Chr3: 18120771-18120812 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G48860:exon:1 | 1085 | Chr3: 18117237-18118321 | Arabidopsis thaliana |
AT3G48860:exon:20 | 368 | Chr3: 18121726-18122093 | Arabidopsis thaliana |
AT3G48860:exon:2 | 672 | Chr3: 18117343-18118014 | Arabidopsis thaliana |
AT3G48860:exon:16 | 42 | Chr3: 18120771-18120812 | Arabidopsis thaliana |
AT3G48860:exon:18 | 41 | Chr3: 18121153-18121193 | Arabidopsis thaliana |
AT3G48860:exon:19 | 133 | Chr3: 18121475-18121607 | Arabidopsis thaliana |
AT3G48860:exon:21 | 1087 | Chr3: 18121726-18122812 | Arabidopsis thaliana |
AT3G48860:exon:3 | 529 | Chr3: 18117486-18118014 | Arabidopsis thaliana |
AT3G48860:exon:4 | 188 | Chr3: 18118134-18118321 | Arabidopsis thaliana |
AT3G48860:exon:5 | 76 | Chr3: 18118612-18118687 | Arabidopsis thaliana |
AT3G48860:exon:6 | 42 | Chr3: 18118816-18118857 | Arabidopsis thaliana |
AT3G48860:exon:7 | 63 | Chr3: 18118940-18119002 | Arabidopsis thaliana |
AT3G48860:exon:8 | 50 | Chr3: 18119227-18119276 | Arabidopsis thaliana |
AT3G48860:exon:9 | 28 | Chr3: 18119378-18119405 | Arabidopsis thaliana |
AT3G48860:exon:10 | 75 | Chr3: 18119513-18119587 | Arabidopsis thaliana |
AT3G48860:exon:11 | 111 | Chr3: 18119678-18119788 | Arabidopsis thaliana |
AT3G48860:exon:12 | 61 | Chr3: 18119876-18119936 | Arabidopsis thaliana |
AT3G48860:exon:13 | 117 | Chr3: 18120097-18120213 | Arabidopsis thaliana |
AT3G48860:exon:14 | 113 | Chr3: 18120303-18120415 | Arabidopsis thaliana |
AT3G48860:exon:15 | 70 | Chr3: 18120515-18120584 | Arabidopsis thaliana |
AT3G48860:exon:17 | 404 | Chr3: 18120771-18121174 | Arabidopsis thaliana |
AT3G48870:exon:18 | 1445 | Chr3: 18122118-18123562 | Arabidopsis thaliana |
AT3G48870:exon:17 | 1421 | Chr3: 18122142-18123562 | Arabidopsis thaliana |
AT3G48870:exon:16 | 1398 | Chr3: 18122165-18123562 | Arabidopsis thaliana |
AT3G48870:exon:15 | 1384 | Chr3: 18122179-18123562 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G48860:five_prime_UTR:1 | 963 | Chr3: 18117237-18118199 | Arabidopsis thaliana |
AT3G48860:five_prime_UTR:2 | 276 | Chr3: 18117343-18117618 | Arabidopsis thaliana |
AT3G48860:five_prime_UTR:3 | 133 | Chr3: 18117486-18117618 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G48870 | locus:2099433 | HSP93-III | 4625 | Chr3: 18122118-18126742 | A. thaliana | Clp ATPase;(source:Araport11) | Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma. May function redundantly with TIC complex in chloroplast protein import. | Clp ATPase | ATCLPC, ATHSP93-III, ClpC2, HSP93-III |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G48860.3 | 2475 | Chr3: 18117237-18122093 |
AT3G48860.2 | 2969 | Chr3: 18117343-18122812 |
AT3G48860.1 | 1927 | Chr3: 18117486-18121174 |
AT3G48870.3 | 3417 | Chr3: 18122118-18126664 |
AT3G48870.1 | 3293 | Chr3: 18122142-18126718 |
AT3G48870.4 | 3320 | Chr3: 18122165-18126638 |
AT3G48870.2 | 3214 | Chr3: 18122179-18126742 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G48860:three_prime_UTR:2 | 240 | Chr3: 18121854-18122093 | Arabidopsis thaliana |
AT3G48860:three_prime_UTR:3 | 959 | Chr3: 18121854-18122812 | Arabidopsis thaliana |
AT3G48860:three_prime_UTR:1 | 309 | Chr3: 18120866-18121174 | Arabidopsis thaliana |
AT3G48870:three_prime_UTR:4 | 245 | Chr3: 18122118-18122362 | Arabidopsis thaliana |
AT3G48870:three_prime_UTR:3 | 221 | Chr3: 18122142-18122362 | Arabidopsis thaliana |
AT3G48870:three_prime_UTR:2 | 198 | Chr3: 18122165-18122362 | Arabidopsis thaliana |
AT3G48870:three_prime_UTR:1 | 184 | Chr3: 18122179-18122362 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SCD2_ARATH | function | Involved in growth and development through its role in cytokinesis and polarized cell expansion. Required for plasma membrane internalization. May function in clathrin-mediated membrane trafficking, including plasma membrane endocytosis, essential to both cytokinesis and cell expansion. |
SCD2_ARATH | subcellular location | Colocalized with clathrin at the plasma membrane. |
SCD2_ARATH | tissue specificity | Expressed in the mature region of the primary root, tips of short, young lateral roots, guard cells in the epidermis of cotyledons and rosette leaves, the socket cells surrounding the base of trichomes and hydathodes of fully expanded rosette leaves. |
Function
Gene Ontology
cellular component | |
---|---|
clathrin-coated vesicle | ECO |
plasma membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
multidimensional cell growth | ECO |
cytokinesis by cell plate formation | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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