Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
Antisense lncRNA: 1, CDSs: 23, Exons: 16, Five Prime UTRs: 5, Genes: 4, mRNAs: 4, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G47000:CDS:11 | 485 | Chr3: 17313811-17314295 | Arabidopsis thaliana |
AT3G47000:CDS:9 | 202 | Chr3: 17314380-17314581 | Arabidopsis thaliana |
AT3G47000:CDS:8 | 183 | Chr3: 17314654-17314836 | Arabidopsis thaliana |
AT3G47000:CDS:7 | 105 | Chr3: 17314937-17315041 | Arabidopsis thaliana |
AT3G47000:CDS:6 | 244 | Chr3: 17315124-17315367 | Arabidopsis thaliana |
AT3G47000:CDS:4 | 146 | Chr3: 17315457-17315602 | Arabidopsis thaliana |
AT3G47000:CDS:3 | 91 | Chr3: 17315697-17315787 | Arabidopsis thaliana |
AT3G47000:CDS:2 | 205 | Chr3: 17316071-17316275 | Arabidopsis thaliana |
AT3G47000:CDS:1 | 166 | Chr3: 17316374-17316539 | Arabidopsis thaliana |
AT3G47000:CDS:11.1 | 485 | Chr3: 17313811-17314295 | Arabidopsis thaliana |
AT3G47000:CDS:9.1 | 202 | Chr3: 17314380-17314581 | Arabidopsis thaliana |
AT3G47000:CDS:8.1 | 183 | Chr3: 17314654-17314836 | Arabidopsis thaliana |
AT3G47000:CDS:7.1 | 105 | Chr3: 17314937-17315041 | Arabidopsis thaliana |
AT3G47000:CDS:6.1 | 244 | Chr3: 17315124-17315367 | Arabidopsis thaliana |
AT3G47000:CDS:5 | 77 | Chr3: 17315457-17315533 | Arabidopsis thaliana |
AT3G47000:CDS:10 | 210 | Chr3: 17314372-17314581 | Arabidopsis thaliana |
AT3G47000:CDS:8.2 | 183 | Chr3: 17314654-17314836 | Arabidopsis thaliana |
AT3G47000:CDS:7.2 | 105 | Chr3: 17314937-17315041 | Arabidopsis thaliana |
AT3G47000:CDS:6.2 | 244 | Chr3: 17315124-17315367 | Arabidopsis thaliana |
AT3G47000:CDS:4.1 | 146 | Chr3: 17315457-17315602 | Arabidopsis thaliana |
AT3G47000:CDS:3.1 | 91 | Chr3: 17315697-17315787 | Arabidopsis thaliana |
AT3G47000:CDS:2.1 | 205 | Chr3: 17316071-17316275 | Arabidopsis thaliana |
AT3G47000:CDS:1.1 | 166 | Chr3: 17316374-17316539 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G46990:exon:1 | 2081 | Chr3: 17311672-17313752 | Arabidopsis thaliana |
AT3G47000:exon:13 | 650 | Chr3: 17313646-17314295 | Arabidopsis thaliana |
AT3G47000:exon:1 | 266 | Chr3: 17316374-17316639 | Arabidopsis thaliana |
AT3G47000:exon:12 | 485 | Chr3: 17313811-17314295 | Arabidopsis thaliana |
AT3G47000:exon:10 | 202 | Chr3: 17314380-17314581 | Arabidopsis thaliana |
AT3G47000:exon:4 | 579 | Chr3: 17315697-17316275 | Arabidopsis thaliana |
AT3G47000:exon:11 | 210 | Chr3: 17314372-17314581 | Arabidopsis thaliana |
AT3G47000:exon:9 | 183 | Chr3: 17314654-17314836 | Arabidopsis thaliana |
AT3G47000:exon:8 | 105 | Chr3: 17314937-17315041 | Arabidopsis thaliana |
AT3G47000:exon:7 | 244 | Chr3: 17315124-17315367 | Arabidopsis thaliana |
AT3G47000:exon:6 | 146 | Chr3: 17315457-17315602 | Arabidopsis thaliana |
AT3G47000:exon:5 | 91 | Chr3: 17315697-17315787 | Arabidopsis thaliana |
AT3G47000:exon:3 | 205 | Chr3: 17316071-17316275 | Arabidopsis thaliana |
AT3G47000:exon:2 | 233 | Chr3: 17316374-17316606 | Arabidopsis thaliana |
AT3G07625:exon:1 | 329 | Chr3: 17315766-17316094 | Arabidopsis thaliana |
AT3G47010:exon:14 | 608 | Chr3: 17316635-17317242 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G47000:five_prime_UTR:1 | 100 | Chr3: 17316540-17316639 | Arabidopsis thaliana |
AT3G47000:five_prime_UTR:5 | 69 | Chr3: 17315534-17315602 | Arabidopsis thaliana |
AT3G47000:five_prime_UTR:4 | 579 | Chr3: 17315697-17316275 | Arabidopsis thaliana |
AT3G47000:five_prime_UTR:3 | 233 | Chr3: 17316374-17316606 | Arabidopsis thaliana |
AT3G47000:five_prime_UTR:2 | 67 | Chr3: 17316540-17316606 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G46990 | locus:2075606 | AT3G46990 | 2081 | Chr3: 17311672-17313752 | A. thaliana | DUF740 family protein, putative (DUF740);(source:Araport11) | NULL | Protein of unknown function (DUF740) | OPL3 | |
AT3G47000 | locus:2075621 | AT3G47000 | 2994 | Chr3: 17313646-17316639 | A. thaliana | Glycosyl hydrolase family protein;(source:Araport11) | NULL | Glycosyl hydrolase family protein | ||
AT3G07625 | AT3G07625 | 329 | Chr3: 17315766-17316094 | A. thaliana | Natural antisense transcript overlaps with AT3G47000;(source:Araport11) | NULL | ||||
AT3G47010 | locus:2075636 | AT3G47010 | 2897 | Chr3: 17316635-17319531 | A. thaliana | Glycosyl hydrolase family protein;(source:Araport11) | NULL | Glycosyl hydrolase family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G46990.1 | 2081 | Chr3: 17311672-17313752 |
AT3G47000.2 | 2177 | Chr3: 17313811-17316606 |
AT3G47000.3 | 1417 | Chr3: 17314372-17316606 |
AT3G47010.1 | 1966 | Chr3: 17316635-17319531 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G46990:three_prime_UTR:1 | 208 | Chr3: 17313545-17313752 | Arabidopsis thaliana |
AT3G47000:three_prime_UTR:1 | 165 | Chr3: 17313646-17313810 | Arabidopsis thaliana |
AT3G47010:three_prime_UTR:3 | 123 | Chr3: 17316635-17316757 | Arabidopsis thaliana |