Genomics
Genome feature
| Region: |
mRNA
|
Length: |
3186
 |
| Location: | Chr3:16525311-16529352 | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G45140:CDS:1 |
352
|
Chr3: 16525437-16525788 | Arabidopsis thaliana |
| AT3G45140:CDS:2 |
813
|
Chr3: 16526118-16526930 | Arabidopsis thaliana |
| AT3G45140:CDS:4 |
86
|
Chr3: 16527035-16527120 | Arabidopsis thaliana |
| AT3G45140:CDS:5 |
111
|
Chr3: 16527456-16527566 | Arabidopsis thaliana |
| AT3G45140:CDS:6 |
302
|
Chr3: 16527653-16527954 | Arabidopsis thaliana |
| AT3G45140:CDS:7 |
267
|
Chr3: 16528108-16528374 | Arabidopsis thaliana |
| AT3G45140:CDS:8 |
760
|
Chr3: 16528474-16529233 | Arabidopsis thaliana |
| AT3G45140:CDS:3 |
739
|
Chr3: 16526192-16526930 | Arabidopsis thaliana |
| AT3G45140:CDS:4.1 |
86
|
Chr3: 16527035-16527120 | Arabidopsis thaliana |
| AT3G45140:CDS:5.1 |
111
|
Chr3: 16527456-16527566 | Arabidopsis thaliana |
| AT3G45140:CDS:6.1 |
302
|
Chr3: 16527653-16527954 | Arabidopsis thaliana |
| AT3G45140:CDS:7.1 |
267
|
Chr3: 16528108-16528374 | Arabidopsis thaliana |
| AT3G45140:CDS:8.1 |
760
|
Chr3: 16528474-16529233 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G45140:exon:1 |
544
|
Chr3: 16525245-16525788 | Arabidopsis thaliana |
| AT3G45140:exon:2 |
728
|
Chr3: 16525311-16526038 | Arabidopsis thaliana |
| AT3G45140:exon:3 |
813
|
Chr3: 16526118-16526930 | Arabidopsis thaliana |
| AT3G45140:exon:4 |
86
|
Chr3: 16527035-16527120 | Arabidopsis thaliana |
| AT3G45140:exon:5 |
111
|
Chr3: 16527456-16527566 | Arabidopsis thaliana |
| AT3G45140:exon:6 |
302
|
Chr3: 16527653-16527954 | Arabidopsis thaliana |
| AT3G45140:exon:7 |
267
|
Chr3: 16528108-16528374 | Arabidopsis thaliana |
| AT3G45140:exon:8 |
879
|
Chr3: 16528474-16529352 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G45140:five_prime_UTR:1 |
192
|
Chr3: 16525245-16525436 | Arabidopsis thaliana |
| AT3G45140:five_prime_UTR:2 |
728
|
Chr3: 16525311-16526038 | Arabidopsis thaliana |
| AT3G45140:five_prime_UTR:3 |
74
|
Chr3: 16526118-16526191 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT3G45140 | locus:2096915 | LOX2 | lipoxygenase 2 |
4108
|
Chr3: 16525245-16529352 | A. thaliana | lipoxygenase 2;(source:Araport11) | Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. The mRNA is cell-to-cell mobile. | lipoxygenase 2 | ATLOX2, LOX2 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G45140:three_prime_UTR:1 |
119
|
Chr3: 16529234-16529352 | Arabidopsis thaliana |
