Genomics
Transcript | Exons | Introns | ||||||
---|---|---|---|---|---|---|---|---|
AT3G28270.2
AT3G28270.2
1524 |
|
|
||||||
AT3G28270.1
AT3G28270.1
1966 |
|
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 2, Exons: 3, Five Prime UTRs: 3, Gene: 1, mRNA: 1, Three Prime UTR: 1, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G28270:CDS:1 | 1125 | Chr3: 10538725-10539849 | Arabidopsis thaliana |
AT3G28270:CDS:1.1 | 1125 | Chr3: 10538725-10539849 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G28270:exon:1 | 167 | Chr3: 10538005-10538171 | Arabidopsis thaliana |
AT3G28270:exon:3 | 1357 | Chr3: 10538714-10540070 | Arabidopsis thaliana |
AT3G28270:exon:2 | 1966 | Chr3: 10538105-10540070 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G28270:five_prime_UTR:1 | 167 | Chr3: 10538005-10538171 | Arabidopsis thaliana |
AT3G28270:five_prime_UTR:3 | 11 | Chr3: 10538714-10538724 | Arabidopsis thaliana |
AT3G28270:five_prime_UTR:2 | 620 | Chr3: 10538105-10538724 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G28270 | locus:2095395 | AT3G28270 | 2066 | Chr3: 10538005-10540070 | A. thaliana | transmembrane protein, putative (DUF677);(source:Araport11) | AFL1 was first identified by immunoscreening an Arabidopsis expression library with antisera recognizing mammalian β1-integrin. It is a peripheral membrane protein associated with endomembranes and plasmamembrane. Based on overexpression and knockdown phenotypes, AFL1 is postulated to function in regulation of growth and proline accumulation in response to drought. AFL1 protein co-localizes with clatharin coated vesicles and has been shown to interact with itself and several endomembrane associated proteins. | Protein of unknown function (DUF677) | AFL1 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G28270:three_prime_UTR:1 | 221 | Chr3: 10539850-10540070 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE43770 | 429 | Chr3: 10538202-10538630 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE43770:transposon_fragment:1 | 429 | Chr3: 10538202-10538630 | Arabidopsis thaliana |