Genomics
Genome feature
| Region: |
transposon_fragment
|
Length: |
2451
 |
| Location: | Chr3:4869718-4872168 reverse strand | ||
Overlapping Features
Genome features that overlap coordinates of this TransposonFragment
Exon: 1, Intergenic Regions: 2, mRNA: 1, Pseudogene: 1, Pseudogenic Exon: 1, Pseudogenic Transcript: 1, Transposable Element: 1, Transposable Element Gene: 1
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G14517:exon:1 |
2299
|
Chr3: 4869841-4872139 | Arabidopsis thaliana |
Intergenic Regions
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| intergenic_region_chrChr3_4869816..4869840 |
25
|
Chr3: 4869816-4869840 | Arabidopsis thaliana |
| intergenic_region_chrChr3_4872140..4875656 |
3517
|
Chr3: 4872140-4875656 | Arabidopsis thaliana |
Pseudogenes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT3G14515 | locus:2829788 | AT3G14515 |
692
|
Chr3: 4869124-4869815 | A. thaliana | pseudogene of Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11) | NULL | NULL |
Pseudogenic Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G14515:pseudogenic_exon:1 |
692
|
Chr3: 4869124-4869815 | Arabidopsis thaliana |
Pseudogenic Transcripts
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT3G14515.1 | 692 | Chr3: 4869124-4869815 |
Transposable Elements
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3TE20540 |
2451
|
Chr3: 4869718-4872168 | Arabidopsis thaliana |
Transposable Element Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT3G14517 | locus:2829793 | AT3G14517 |
2299
|
Chr3: 4869841-4872139 | A. thaliana | transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.0e-38 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10) | NULL | transposable element gene |
