Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05630:CDS:1 | 225 | Chr3: 1635321-1635545 | Arabidopsis thaliana |
AT3G05630:CDS:2 | 102 | Chr3: 1635819-1635920 | Arabidopsis thaliana |
AT3G05630:CDS:3 | 122 | Chr3: 1636006-1636127 | Arabidopsis thaliana |
AT3G05630:CDS:4 | 142 | Chr3: 1636225-1636366 | Arabidopsis thaliana |
AT3G05630:CDS:5 | 171 | Chr3: 1636453-1636623 | Arabidopsis thaliana |
AT3G05630:CDS:6 | 402 | Chr3: 1636714-1637115 | Arabidopsis thaliana |
AT3G05630:CDS:7 | 117 | Chr3: 1637197-1637313 | Arabidopsis thaliana |
AT3G05630:CDS:8 | 140 | Chr3: 1637402-1637541 | Arabidopsis thaliana |
AT3G05630:CDS:9 | 150 | Chr3: 1637620-1637769 | Arabidopsis thaliana |
AT3G05630:CDS:10 | 157 | Chr3: 1637844-1638000 | Arabidopsis thaliana |
AT3G05630:CDS:11 | 471 | Chr3: 1638076-1638546 | Arabidopsis thaliana |
AT3G05630:CDS:12 | 147 | Chr3: 1638638-1638784 | Arabidopsis thaliana |
AT3G05630:CDS:13 | 300 | Chr3: 1638862-1639161 | Arabidopsis thaliana |
AT3G05630:CDS:14 | 132 | Chr3: 1639239-1639370 | Arabidopsis thaliana |
AT3G05630:CDS:15 | 128 | Chr3: 1639613-1639740 | Arabidopsis thaliana |
AT3G05630:CDS:16 | 235 | Chr3: 1639871-1640105 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05630:exon:1 | 352 | Chr3: 1635194-1635545 | Arabidopsis thaliana |
AT3G05630:exon:2 | 102 | Chr3: 1635819-1635920 | Arabidopsis thaliana |
AT3G05630:exon:3 | 122 | Chr3: 1636006-1636127 | Arabidopsis thaliana |
AT3G05630:exon:4 | 142 | Chr3: 1636225-1636366 | Arabidopsis thaliana |
AT3G05630:exon:5 | 171 | Chr3: 1636453-1636623 | Arabidopsis thaliana |
AT3G05630:exon:6 | 402 | Chr3: 1636714-1637115 | Arabidopsis thaliana |
AT3G05630:exon:7 | 117 | Chr3: 1637197-1637313 | Arabidopsis thaliana |
AT3G05630:exon:8 | 140 | Chr3: 1637402-1637541 | Arabidopsis thaliana |
AT3G05630:exon:9 | 150 | Chr3: 1637620-1637769 | Arabidopsis thaliana |
AT3G05630:exon:10 | 157 | Chr3: 1637844-1638000 | Arabidopsis thaliana |
AT3G05630:exon:11 | 471 | Chr3: 1638076-1638546 | Arabidopsis thaliana |
AT3G05630:exon:12 | 147 | Chr3: 1638638-1638784 | Arabidopsis thaliana |
AT3G05630:exon:13 | 300 | Chr3: 1638862-1639161 | Arabidopsis thaliana |
AT3G05630:exon:14 | 132 | Chr3: 1639239-1639370 | Arabidopsis thaliana |
AT3G05630:exon:15 | 128 | Chr3: 1639613-1639740 | Arabidopsis thaliana |
AT3G05630:exon:16 | 487 | Chr3: 1639871-1640357 | Arabidopsis thaliana |
AT3G05640:exon:11 | 452 | Chr3: 1640350-1640801 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05630:five_prime_UTR:1 | 127 | Chr3: 1635194-1635320 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G05630 | locus:2078037 | PLDP2 | phospholipase D P2 | 5164 | Chr3: 1635194-1640357 | A. thaliana | phospholipase D P2;(source:Araport11) | Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. Expression is upregulated in the shoot of cax1/cax3 mutant and is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots. | phospholipase D P2 | PDLZ2, PLDP2, PLDZETA2 |
AT3G05640 | locus:2078117 | AT3G05640 | 2904 | Chr3: 1640350-1643253 | A. thaliana | Protein phosphatase 2C family protein;(source:Araport11) | EGR1 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress.EGR1 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane. | Protein phosphatase 2C family protein | AtPP2CF1, EGR1 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05630:three_prime_UTR:1 | 252 | Chr3: 1640106-1640357 | Arabidopsis thaliana |
AT3G05640:three_prime_UTR:3 | 260 | Chr3: 1640350-1640609 | Arabidopsis thaliana |