Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04870:CDS:1 | 118 | Chr3: 1342842-1342959 | Arabidopsis thaliana |
AT3G04870:CDS:2 | 125 | Chr3: 1343520-1343644 | Arabidopsis thaliana |
AT3G04870:CDS:3 | 135 | Chr3: 1343722-1343856 | Arabidopsis thaliana |
AT3G04870:CDS:4 | 73 | Chr3: 1343941-1344013 | Arabidopsis thaliana |
AT3G04870:CDS:5 | 74 | Chr3: 1344083-1344156 | Arabidopsis thaliana |
AT3G04870:CDS:6 | 105 | Chr3: 1344339-1344443 | Arabidopsis thaliana |
AT3G04870:CDS:7 | 245 | Chr3: 1344523-1344767 | Arabidopsis thaliana |
AT3G04870:CDS:8 | 88 | Chr3: 1344856-1344943 | Arabidopsis thaliana |
AT3G04870:CDS:9 | 200 | Chr3: 1345090-1345289 | Arabidopsis thaliana |
AT3G04870:CDS:10 | 129 | Chr3: 1345385-1345513 | Arabidopsis thaliana |
AT3G04870:CDS:11 | 73 | Chr3: 1345597-1345669 | Arabidopsis thaliana |
AT3G04870:CDS:12 | 165 | Chr3: 1345749-1345913 | Arabidopsis thaliana |
AT3G04870:CDS:13 | 147 | Chr3: 1346043-1346189 | Arabidopsis thaliana |
AT3G04870:CDS:1.1 | 118 | Chr3: 1342842-1342959 | Arabidopsis thaliana |
AT3G04870:CDS:2.1 | 125 | Chr3: 1343520-1343644 | Arabidopsis thaliana |
AT3G04870:CDS:3.1 | 135 | Chr3: 1343722-1343856 | Arabidopsis thaliana |
AT3G04870:CDS:4.1 | 73 | Chr3: 1343941-1344013 | Arabidopsis thaliana |
AT3G04870:CDS:5.1 | 74 | Chr3: 1344083-1344156 | Arabidopsis thaliana |
AT3G04870:CDS:6.1 | 105 | Chr3: 1344339-1344443 | Arabidopsis thaliana |
AT3G04870:CDS:7.1 | 245 | Chr3: 1344523-1344767 | Arabidopsis thaliana |
AT3G04870:CDS:8.1 | 88 | Chr3: 1344856-1344943 | Arabidopsis thaliana |
AT3G04870:CDS:9.1 | 200 | Chr3: 1345090-1345289 | Arabidopsis thaliana |
AT3G04870:CDS:10.1 | 129 | Chr3: 1345385-1345513 | Arabidopsis thaliana |
AT3G04870:CDS:11.1 | 73 | Chr3: 1345597-1345669 | Arabidopsis thaliana |
AT3G04870:CDS:12.1 | 165 | Chr3: 1345749-1345913 | Arabidopsis thaliana |
AT3G04870:CDS:13.1 | 147 | Chr3: 1346043-1346189 | Arabidopsis thaliana |
AT3G04870:CDS:1.2 | 118 | Chr3: 1342842-1342959 | Arabidopsis thaliana |
AT3G04870:CDS:2.2 | 125 | Chr3: 1343520-1343644 | Arabidopsis thaliana |
AT3G04870:CDS:3.2 | 135 | Chr3: 1343722-1343856 | Arabidopsis thaliana |
AT3G04870:CDS:4.2 | 73 | Chr3: 1343941-1344013 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04870:exon:1 | 31 | Chr3: 1342455-1342485 | Arabidopsis thaliana |
AT3G04870:exon:2 | 146 | Chr3: 1342575-1342720 | Arabidopsis thaliana |
AT3G04870:exon:6 | 128 | Chr3: 1342832-1342959 | Arabidopsis thaliana |
AT3G04870:exon:19 | 345 | Chr3: 1346043-1346387 | Arabidopsis thaliana |
AT3G04870:exon:3 | 365 | Chr3: 1342595-1342959 | Arabidopsis thaliana |
AT3G04870:exon:4 | 113 | Chr3: 1342608-1342720 | Arabidopsis thaliana |
AT3G04870:exon:5 | 148 | Chr3: 1342812-1342959 | Arabidopsis thaliana |
AT3G04870:exon:7 | 125 | Chr3: 1343520-1343644 | Arabidopsis thaliana |
AT3G04870:exon:8 | 135 | Chr3: 1343722-1343856 | Arabidopsis thaliana |
AT3G04870:exon:9 | 73 | Chr3: 1343941-1344013 | Arabidopsis thaliana |
AT3G04870:exon:10 | 74 | Chr3: 1344083-1344156 | Arabidopsis thaliana |
AT3G04870:exon:11 | 105 | Chr3: 1344339-1344443 | Arabidopsis thaliana |
AT3G04870:exon:12 | 245 | Chr3: 1344523-1344767 | Arabidopsis thaliana |
AT3G04870:exon:13 | 88 | Chr3: 1344856-1344943 | Arabidopsis thaliana |
AT3G04870:exon:14 | 200 | Chr3: 1345090-1345289 | Arabidopsis thaliana |
AT3G04870:exon:15 | 129 | Chr3: 1345385-1345513 | Arabidopsis thaliana |
AT3G04870:exon:16 | 73 | Chr3: 1345597-1345669 | Arabidopsis thaliana |
AT3G04870:exon:17 | 165 | Chr3: 1345749-1345913 | Arabidopsis thaliana |
AT3G04870:exon:18 | 147 | Chr3: 1346043-1346189 | Arabidopsis thaliana |
AT3G04880:exon:1 | 1105 | Chr3: 1346273-1347377 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04870:five_prime_UTR:1 | 31 | Chr3: 1342455-1342485 | Arabidopsis thaliana |
AT3G04870:five_prime_UTR:2 | 146 | Chr3: 1342575-1342720 | Arabidopsis thaliana |
AT3G04870:five_prime_UTR:6 | 10 | Chr3: 1342832-1342841 | Arabidopsis thaliana |
AT3G04870:five_prime_UTR:3 | 247 | Chr3: 1342595-1342841 | Arabidopsis thaliana |
AT3G04870:five_prime_UTR:4 | 113 | Chr3: 1342608-1342720 | Arabidopsis thaliana |
AT3G04870:five_prime_UTR:5 | 30 | Chr3: 1342812-1342841 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G04870 | locus:2114789 | ZDS | zeta-carotene desaturase | 3933 | Chr3: 1342455-1346387 | A. thaliana | zeta-carotene desaturase;(source:Araport11) | Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene. | zeta-carotene desaturase | PDE181, SPC1, ZDS |
AT3G04880 | locus:2114890 | DRT102 | DNA-DAMAGE-REPAIR/TOLERATION 2 | 1105 | Chr3: 1346273-1347377 | A. thaliana | DNA-damage-repair/toleration protein (DRT102);(source:Araport11) | encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). | DNA-damage-repair/toleration protein (DRT102) | DRT102 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G04870.2 | 2031 | Chr3: 1342575-1346387 |
AT3G04870.3 | 1924 | Chr3: 1342595-1346189 |
AT3G04870.4 | 1820 | Chr3: 1342608-1346189 |
AT3G04880.1 | 1105 | Chr3: 1346273-1347377 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04870:three_prime_UTR:1 | 198 | Chr3: 1346190-1346387 | Arabidopsis thaliana |
AT3G04880:three_prime_UTR:1 | 158 | Chr3: 1346273-1346430 | Arabidopsis thaliana |