help  | faq  | software  | BAR
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : VDAC1 A. thaliana

DB identifier  ? AT3G01280 Secondary Identifier  ? locus:2100252
Name  ? voltage dependent anion channel 1 Brief Description  voltage dependent anion channel 1
TAIR Computational Description  voltage dependent anion channel 1;(source:Araport11)
TAIR Curator Summary  Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol. The mRNA is cell-to-cell mobile.
TAIR Short Description  voltage dependent anion channel 1
TAIR Aliases  ATVDAC1, VDAC1

4 Gene Rifs

1 Organism

33 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2520  
Location: Chr3:85551-88070

Gene models - VDAC1 AT3G01280

? Gene models

Transcripts: 1  Exons: 6  Introns: 5 

Overlapping Features

? Genome features that overlap coordinates of this Gene

7 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
VDAC1_ARATH function Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant development at reproductive stage, is important for pollen development and may regulate hydrogen peroxide generation during disease resistance.
VDAC1_ARATH similarity Belongs to the eukaryotic mitochondrial porin (TC 1.B.8.1) family.
VDAC1_ARATH tissue specificity Expressed in shoot meristems, root meristematic zone, lateral roots, leaves, stigma and anthers.

1 Proteins

Function

Gene Ontology

cellular component
plant-type vacuole  ? ECO  
cytosol  ? ECO  
plasma membrane  ? ECO  
chloroplast envelope  ? ECO  
mitochondrial outer membrane  ? ECO  
pore complex  ? ECO  
chloroplast  ? ECO  
mitochondrion  ? ECO  
vacuole  ? ECO  
molecular function
voltage-gated monoatomic anion channel activity  ? ECO  
porin activity  ? ECO  
biological process
defense response  ? ECO  
response to bacterium  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets