Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G46830:CDS:1 | 39 | Chr2: 19246005-19246043 | Arabidopsis thaliana |
AT2G46830:CDS:2 | 112 | Chr2: 19246123-19246234 | Arabidopsis thaliana |
AT2G46830:CDS:3 | 62 | Chr2: 19246323-19246384 | Arabidopsis thaliana |
AT2G46830:CDS:4 | 195 | Chr2: 19246863-19247057 | Arabidopsis thaliana |
AT2G46830:CDS:6 | 174 | Chr2: 19247145-19247318 | Arabidopsis thaliana |
AT2G46830:CDS:7 | 882 | Chr2: 19247402-19248283 | Arabidopsis thaliana |
AT2G46830:CDS:8 | 363 | Chr2: 19248355-19248717 | Arabidopsis thaliana |
AT2G46830:CDS:5 | 162 | Chr2: 19246896-19247057 | Arabidopsis thaliana |
AT2G46830:CDS:6.1 | 174 | Chr2: 19247145-19247318 | Arabidopsis thaliana |
AT2G46830:CDS:7.1 | 882 | Chr2: 19247402-19248283 | Arabidopsis thaliana |
AT2G46830:CDS:8.1 | 363 | Chr2: 19248355-19248717 | Arabidopsis thaliana |
AT2G46830:CDS:5.1 | 162 | Chr2: 19246896-19247057 | Arabidopsis thaliana |
AT2G46830:CDS:6.2 | 174 | Chr2: 19247145-19247318 | Arabidopsis thaliana |
AT2G46830:CDS:7.2 | 882 | Chr2: 19247402-19248283 | Arabidopsis thaliana |
AT2G46830:CDS:8.2 | 363 | Chr2: 19248355-19248717 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G46830:exon:1 | 282 | Chr2: 19245591-19245872 | Arabidopsis thaliana |
AT2G46830:exon:5 | 62 | Chr2: 19246323-19246384 | Arabidopsis thaliana |
AT2G46830:exon:12 | 561 | Chr2: 19248355-19248915 | Arabidopsis thaliana |
AT2G46830:exon:2 | 189 | Chr2: 19245684-19245872 | Arabidopsis thaliana |
AT2G46830:exon:3 | 87 | Chr2: 19245957-19246043 | Arabidopsis thaliana |
AT2G46830:exon:4 | 112 | Chr2: 19246123-19246234 | Arabidopsis thaliana |
AT2G46830:exon:6 | 429 | Chr2: 19246323-19246751 | Arabidopsis thaliana |
AT2G46830:exon:7 | 71 | Chr2: 19246681-19246751 | Arabidopsis thaliana |
AT2G46830:exon:8 | 195 | Chr2: 19246863-19247057 | Arabidopsis thaliana |
AT2G46830:exon:9 | 174 | Chr2: 19247145-19247318 | Arabidopsis thaliana |
AT2G46830:exon:10 | 882 | Chr2: 19247402-19248283 | Arabidopsis thaliana |
AT2G46830:exon:11 | 560 | Chr2: 19248355-19248914 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G46830:five_prime_UTR:1 | 282 | Chr2: 19245591-19245872 | Arabidopsis thaliana |
AT2G46830:five_prime_UTR:3 | 48 | Chr2: 19245957-19246004 | Arabidopsis thaliana |
AT2G46830:five_prime_UTR:2 | 189 | Chr2: 19245684-19245872 | Arabidopsis thaliana |
AT2G46830:five_prime_UTR:4 | 87 | Chr2: 19245957-19246043 | Arabidopsis thaliana |
AT2G46830:five_prime_UTR:5 | 112 | Chr2: 19246123-19246234 | Arabidopsis thaliana |
AT2G46830:five_prime_UTR:6 | 429 | Chr2: 19246323-19246751 | Arabidopsis thaliana |
AT2G46830:five_prime_UTR:7 | 71 | Chr2: 19246681-19246751 | Arabidopsis thaliana |
AT2G46830:five_prime_UTR:8 | 33 | Chr2: 19246863-19246895 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G46830 | locus:2044345 | CCA1 | circadian clock associated 1 | 3325 | Chr2: 19245591-19248915 | A. thaliana | circadian clock associated 1;(source:Araport11) | Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. CCA1 binds the GI promoter. | circadian clock associated 1 | AtCCA1, CCA1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G46830.2 | 2628 | Chr2: 19245684-19248914 |
AT2G46830.3 | 1882 | Chr2: 19246681-19248914 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G46830:three_prime_UTR:2 | 198 | Chr2: 19248718-19248915 | Arabidopsis thaliana |
AT2G46830:three_prime_UTR:1 | 197 | Chr2: 19248718-19248914 | Arabidopsis thaliana |