Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposonFragment
Exons: 5, Genes: 2, Intergenic Regions: 3, mRNAs: 3, snRNA: 1, Three Prime UTR: 1, Transposable Element: 1, Transposable Element Genes: 2
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G15535:exon:2 | 443 | Chr2: 6778437-6778879 | Arabidopsis thaliana |
AT2G15540:exon:1 | 4062 | Chr2: 6778957-6783018 | Arabidopsis thaliana |
AT2G15550:exon:2 | 900 | Chr2: 6783186-6784085 | Arabidopsis thaliana |
AT2G15550:exon:1 | 870 | Chr2: 6784311-6785180 | Arabidopsis thaliana |
AT2G06455:exon:1 | 76 | Chr2: 6784794-6784869 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G15535 | locus:505006246 | LCR10 | low-molecular-weight cysteine-rich 10 | 689 | Chr2: 6778191-6778879 | A. thaliana | low-molecular-weight cysteine-rich 10;(source:Araport11) | NULL | low-molecular-weight cysteine-rich 10 | LCR10 |
AT2G06455 | U6-7 | 76 | Chr2: 6784794-6784869 | A. thaliana | U6;(source:Araport11) | NULL | U6-7 |
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr2_6778880..6778956 | 77 | Chr2: 6778880-6778956 | Arabidopsis thaliana |
intergenic_region_chrChr2_6783019..6783185 | 167 | Chr2: 6783019-6783185 | Arabidopsis thaliana |
intergenic_region_chrChr2_6785181..6785903 | 723 | Chr2: 6785181-6785903 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G15535.1 | 563 | Chr2: 6778191-6778879 |
AT2G15540.1 | 4062 | Chr2: 6778957-6783018 |
AT2G15550.1 | 1770 | Chr2: 6783186-6785180 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G15535:three_prime_UTR:1 | 258 | Chr2: 6778622-6778879 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE27670 | 6712 | Chr2: 6778862-6785573 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G15540 | locus:2053633 | AT2G15540 | 4062 | Chr2: 6778957-6783018 | A. thaliana | transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.7e-33 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10) | NULL | transposable element gene | ||
AT2G15550 | locus:2053547 | AT2G15550 | 1995 | Chr2: 6783186-6785180 | A. thaliana | transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16410.1);(source:TAIR10) | NULL | transposable element gene |