Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposableElement
Exons: 13, Intergenic Regions: 4, mRNAs: 3, Transposable Element: 1, Transposable Element Genes: 3, Transposon Fragments: 5
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G14010:exon:1 | 380 | Chr2: 5888321-5888700 | Arabidopsis thaliana |
AT2G14010:exon:2 | 281 | Chr2: 5888758-5889038 | Arabidopsis thaliana |
AT2G14010:exon:3 | 95 | Chr2: 5889084-5889178 | Arabidopsis thaliana |
AT2G14010:exon:4 | 552 | Chr2: 5890112-5890663 | Arabidopsis thaliana |
AT2G14010:exon:5 | 300 | Chr2: 5890851-5891150 | Arabidopsis thaliana |
AT2G14010:exon:6 | 114 | Chr2: 5891269-5891382 | Arabidopsis thaliana |
AT2G14010:exon:7 | 87 | Chr2: 5891459-5891545 | Arabidopsis thaliana |
AT2G14010:exon:8 | 81 | Chr2: 5891620-5891700 | Arabidopsis thaliana |
AT2G14010:exon:9 | 107 | Chr2: 5892182-5892288 | Arabidopsis thaliana |
AT2G14010:exon:10 | 85 | Chr2: 5892372-5892456 | Arabidopsis thaliana |
AT2G14010:exon:11 | 420 | Chr2: 5892607-5893026 | Arabidopsis thaliana |
AT2G14020:exon:1 | 486 | Chr2: 5893787-5894272 | Arabidopsis thaliana |
AT2G14030:exon:1 | 3370 | Chr2: 5895268-5898637 | Arabidopsis thaliana |
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr2_5885986..5888320 | 2335 | Chr2: 5885986-5888320 | Arabidopsis thaliana |
intergenic_region_chrChr2_5893027..5893786 | 760 | Chr2: 5893027-5893786 | Arabidopsis thaliana |
intergenic_region_chrChr2_5894273..5895267 | 995 | Chr2: 5894273-5895267 | Arabidopsis thaliana |
intergenic_region_chrChr2_5898638..5900981 | 2344 | Chr2: 5898638-5900981 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G14010.1 | 2502 | Chr2: 5888321-5893026 |
AT2G14020.1 | 486 | Chr2: 5893787-5894272 |
AT2G14030.1 | 3370 | Chr2: 5895268-5898637 |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE23970 | 1398 | Chr2: 5886607-5888004 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G14010 | locus:2053416 | AT2G14010 | 4706 | Chr2: 5888321-5893026 | A. thaliana | transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1);(source:TAIR10) | NULL | transposable element gene | ||
AT2G14020 | locus:2053422 | AT2G14020 | 486 | Chr2: 5893787-5894272 | A. thaliana | transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44880.1);(source:TAIR10) | NULL | transposable element gene | ||
AT2G14030 | locus:2053428 | AT2G14030 | 3370 | Chr2: 5895268-5898637 | A. thaliana | transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.1e-78 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE23965:transposon_fragment:4 | 285 | Chr2: 5886322-5886606 | Arabidopsis thaliana |
AT2TE23965:transposon_fragment:3 | 3625 | Chr2: 5888008-5891632 | Arabidopsis thaliana |
AT2TE23965:transposon_fragment:2 | 1384 | Chr2: 5891633-5893016 | Arabidopsis thaliana |
AT2TE23965:transposon_fragment:1 | 7110 | Chr2: 5893017-5900126 | Arabidopsis thaliana |
AT2TE23970:transposon_fragment:1 | 1398 | Chr2: 5886607-5888004 | Arabidopsis thaliana |