Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposableElement
Exons: 2, Intergenic Region: 1, mRNAs: 2, Transposable Element: 1, Transposable Element Genes: 2, Transposon Fragment: 1
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G11230:exon:1 | 4410 | Chr2: 4463180-4467589 | Arabidopsis thaliana |
AT2G11235:exon:1 | 2406 | Chr2: 4468250-4470655 | Arabidopsis thaliana |
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr2_4467590..4468249 | 660 | Chr2: 4467590-4468249 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G11230.1 | 4410 | Chr2: 4463180-4467589 |
AT2G11235.1 | 2406 | Chr2: 4468250-4470655 |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE18710 | 10270 | Chr2: 4460099-4470368 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G11230 | locus:2055091 | AT2G11230 | 4410 | Chr2: 4463180-4467589 | A. thaliana | transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.9e-61 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10) | NULL | transposable element gene | ||
AT2G11235 | locus:1006230084 | AT2G11235 | 2406 | Chr2: 4468250-4470655 | A. thaliana | transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-94 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE18720:transposon_fragment:1 | 2598 | Chr2: 4465950-4468547 | Arabidopsis thaliana |