Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposableElement
Exons: 4, Gene: 1, Intergenic Regions: 3, mRNAs: 2, Transcript Regions: 2, Transposable Element Genes: 2, Transposon Fragments: 2
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G00410:exon:1 | 419 | Chr2: 1781464-1781882 | Arabidopsis thaliana |
AT2G00410:exon:2 | 962 | Chr2: 1780886-1781847 | Arabidopsis thaliana |
AT2G05030:exon:1 | 618 | Chr2: 1781886-1782503 | Arabidopsis thaliana |
AT2G05040:exon:1 | 3345 | Chr2: 1783119-1786463 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G00410 | AT2G00410 | 1008 | Chr2: 1780875-1781882 | A. thaliana | novel transcribed region;(source:Araport11) | NULL |
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr2_1781883..1781885 | 3 | Chr2: 1781883-1781885 | Arabidopsis thaliana |
intergenic_region_chrChr2_1782504..1783118 | 615 | Chr2: 1782504-1783118 | Arabidopsis thaliana |
intergenic_region_chrChr2_1786464..1794034 | 7571 | Chr2: 1786464-1794034 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G05030.1 | 618 | Chr2: 1781886-1782503 |
AT2G05040.1 | 3345 | Chr2: 1783119-1786463 |
Transcript Regions
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G00410.1 | 919 | Chr2: 1780875-1781882 |
AT2G00410.2 | 962 | Chr2: 1780886-1781847 |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G05030 | locus:2045024 | AT2G05030 | 618 | Chr2: 1781886-1782503 | A. thaliana | transposable_element_gene;(source:Araport11);contains domain GAG/POL/ENV POLYPROTEIN (PTHR10178);(source:TAIR10) | NULL | transposable element gene | ||
AT2G05040 | locus:2045034 | AT2G05040 | 3345 | Chr2: 1783119-1786463 | A. thaliana | transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.6e-200 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE08225:transposon_fragment:1 | 628 | Chr2: 1781546-1782173 | Arabidopsis thaliana |
AT2TE08225:transposon_fragment:2 | 4582 | Chr2: 1782210-1786791 | Arabidopsis thaliana |