Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposableElement
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G04950:exon:1 | 1969 | Chr2: 1743182-1745150 | Arabidopsis thaliana |
AT2G04970:exon:11 | 48 | Chr2: 1745973-1746020 | Arabidopsis thaliana |
AT2G04970:exon:10 | 171 | Chr2: 1746120-1746290 | Arabidopsis thaliana |
AT2G04970:exon:9 | 119 | Chr2: 1746364-1746482 | Arabidopsis thaliana |
AT2G04970:exon:8 | 91 | Chr2: 1746564-1746654 | Arabidopsis thaliana |
AT2G04970:exon:7 | 147 | Chr2: 1746735-1746881 | Arabidopsis thaliana |
AT2G04970:exon:6 | 147 | Chr2: 1746962-1747108 | Arabidopsis thaliana |
AT2G04970:exon:5 | 120 | Chr2: 1747698-1747817 | Arabidopsis thaliana |
AT2G04970:exon:4 | 120 | Chr2: 1747992-1748111 | Arabidopsis thaliana |
AT2G04970:exon:3 | 126 | Chr2: 1748279-1748404 | Arabidopsis thaliana |
AT2G04970:exon:2 | 444 | Chr2: 1748662-1749105 | Arabidopsis thaliana |
AT2G04970:exon:1 | 894 | Chr2: 1749314-1750207 | Arabidopsis thaliana |
AT2G04980:exon:1 | 4605 | Chr2: 1751964-1756568 | Arabidopsis thaliana |
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr2_1740569..1743181 | 2613 | Chr2: 1740569-1743181 | Arabidopsis thaliana |
intergenic_region_chrChr2_1745151..1745972 | 822 | Chr2: 1745151-1745972 | Arabidopsis thaliana |
intergenic_region_chrChr2_1750208..1751963 | 1756 | Chr2: 1750208-1751963 | Arabidopsis thaliana |
intergenic_region_chrChr2_1756569..1758935 | 2367 | Chr2: 1756569-1758935 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G04950.1 | 1969 | Chr2: 1743182-1745150 |
AT2G04970.1 | 2427 | Chr2: 1745973-1750207 |
AT2G04980.1 | 4605 | Chr2: 1751964-1756568 |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G04950 | locus:2044983 | AT2G04950 | 1969 | Chr2: 1743182-1745150 | A. thaliana | transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.0e-82 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10) | NULL | transposable element gene | ||
AT2G04970 | locus:2044953 | AT2G04970 | 4235 | Chr2: 1745973-1750207 | A. thaliana | transposable_element_gene;(source:Araport11);similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1);(source:TAIR10) | NULL | transposable element gene | ||
AT2G04980 | locus:2044963 | AT2G04980 | 4605 | Chr2: 1751964-1756568 | A. thaliana | transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, similar to At1g32840, At4g04010, At2g06430, At2g15140, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At2g02210, At3g32900;(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE08110:transposon_fragment:1 | 15658 | Chr2: 1741426-1757083 | Arabidopsis thaliana |