Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 8, Exons: 8, Five Prime UTR: 1, Genes: 4, mRNA: 1, miRNAs: 3, miRNA Primary Transcripts: 2, Three Prime UTR: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G78476:CDS:1 | 21 | Chr1: 29524050-29524070 | Arabidopsis thaliana |
AT1G78476:CDS:2 | 64 | Chr1: 29524174-29524237 | Arabidopsis thaliana |
AT1G78476:CDS:3 | 63 | Chr1: 29524585-29524647 | Arabidopsis thaliana |
AT1G78476:CDS:4 | 142 | Chr1: 29525535-29525676 | Arabidopsis thaliana |
AT1G78476:CDS:5 | 91 | Chr1: 29526005-29526095 | Arabidopsis thaliana |
AT1G78480:CDS:3 | 201 | Chr1: 29525501-29525701 | Arabidopsis thaliana |
AT1G78480:CDS:2 | 76 | Chr1: 29525785-29525860 | Arabidopsis thaliana |
AT1G78480:CDS:1 | 332 | Chr1: 29526032-29526363 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G78476:exon:1 | 89 | Chr1: 29523982-29524070 | Arabidopsis thaliana |
AT1G78476:exon:2 | 64 | Chr1: 29524174-29524237 | Arabidopsis thaliana |
AT1G78476:exon:3 | 63 | Chr1: 29524585-29524647 | Arabidopsis thaliana |
AT1G78476:exon:4 | 142 | Chr1: 29525535-29525676 | Arabidopsis thaliana |
AT1G78476:exon:5 | 280 | Chr1: 29526005-29526284 | Arabidopsis thaliana |
AT1G78480:exon:3 | 201 | Chr1: 29525501-29525701 | Arabidopsis thaliana |
AT1G78480:exon:2 | 76 | Chr1: 29525785-29525860 | Arabidopsis thaliana |
AT1G78480:exon:1 | 332 | Chr1: 29526032-29526363 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G78476:five_prime_UTR:1 | 68 | Chr1: 29523982-29524049 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G78476 | locus:6530298171 | AT1G78476 | 2303 | Chr1: 29523982-29526284 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL | ||
AT1G78478 | locus:4515102774 | MIR833A | microRNA833A | 187 | Chr1: 29525151-29525337 | A. thaliana | microRNA ath-MIR833a precursor;(source:Araport11) | Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAGACCGAUGUCAACAAACAAG | MIR833a; miRNA | MIR833A |
AT1G09817 | MIR833b | 85 | Chr1: 29525202-29525286 | A. thaliana | microRNA ath-MIR833b precursor;(source:Araport11) | NULL | ath-MIR833b | |||
AT1G78480 | locus:2032070 | AT1G78480 | 863 | Chr1: 29525501-29526363 | A. thaliana | Prenyltransferase family protein;(source:Araport11) | NULL | Prenyltransferase family protein |
miRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
ath-miR833a-5p | 22 | Chr1: 29525204-29525225 |
ath-miR833b | 21 | Chr1: 29525264-29525284 |
ath-miR833a-3p | 22 | Chr1: 29525265-29525286 |
miRNA Primary Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G78478.1 | 187 | Chr1: 29525151-29525337 |
AT1G09817.1 | 85 | Chr1: 29525202-29525286 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G78476:three_prime_UTR:1 | 189 | Chr1: 29526096-29526284 | Arabidopsis thaliana |