Genomics
Genome feature
| Region: |
mRNA
|
Length: |
2028
 |
| Location: | Chr1:24583740-24586760 reverse strand | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G66040:CDS:9 |
171
|
Chr1: 24583820-24583990 | Arabidopsis thaliana |
| AT1G66040:CDS:8 |
215
|
Chr1: 24584086-24584300 | Arabidopsis thaliana |
| AT1G66040:CDS:7 |
130
|
Chr1: 24584381-24584510 | Arabidopsis thaliana |
| AT1G66040:CDS:6 |
103
|
Chr1: 24584598-24584700 | Arabidopsis thaliana |
| AT1G66040:CDS:5 |
65
|
Chr1: 24584786-24584850 | Arabidopsis thaliana |
| AT1G66040:CDS:4 |
100
|
Chr1: 24584941-24585040 | Arabidopsis thaliana |
| AT1G66040:CDS:3 |
126
|
Chr1: 24585181-24585306 | Arabidopsis thaliana |
| AT1G66040:CDS:2 |
536
|
Chr1: 24585402-24585937 | Arabidopsis thaliana |
| AT1G66040:CDS:1 |
423
|
Chr1: 24586259-24586681 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G66040:exon:9 |
251
|
Chr1: 24583740-24583990 | Arabidopsis thaliana |
| AT1G66040:exon:8 |
215
|
Chr1: 24584086-24584300 | Arabidopsis thaliana |
| AT1G66040:exon:7 |
130
|
Chr1: 24584381-24584510 | Arabidopsis thaliana |
| AT1G66040:exon:6 |
103
|
Chr1: 24584598-24584700 | Arabidopsis thaliana |
| AT1G66040:exon:5 |
65
|
Chr1: 24584786-24584850 | Arabidopsis thaliana |
| AT1G66040:exon:4 |
100
|
Chr1: 24584941-24585040 | Arabidopsis thaliana |
| AT1G66040:exon:3 |
126
|
Chr1: 24585181-24585306 | Arabidopsis thaliana |
| AT1G66040:exon:2 |
536
|
Chr1: 24585402-24585937 | Arabidopsis thaliana |
| AT1G66040:exon:1 |
502
|
Chr1: 24586259-24586760 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G66040:five_prime_UTR:1 |
79
|
Chr1: 24586682-24586760 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT1G66040 | locus:2013800 | VIM4 | VARIANT IN METHYLATION 4 |
3021
|
Chr1: 24583740-24586760 | A. thaliana | Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11) | predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2. | Zinc finger (C3HC4-type RING finger) family protein | ORTH4, VIM4 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G66040:three_prime_UTR:1 |
80
|
Chr1: 24583740-24583819 | Arabidopsis thaliana |
