Genomics
Transcript | Exons | Introns | ||||||
---|---|---|---|---|---|---|---|---|
UBQ13
AT1G65350.1
960 |
|
|
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 5, Exons: 6, Genes: 3, mRNAs: 3, Transposable Elements: 2, Transposable Element Gene: 1, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G65350:CDS:2 | 103 | Chr1: 24272518-24272620 | Arabidopsis thaliana |
AT1G65350:CDS:1 | 857 | Chr1: 24276419-24277275 | Arabidopsis thaliana |
AT1G65346:CDS:2 | 240 | Chr1: 24273181-24273420 | Arabidopsis thaliana |
AT1G65346:CDS:1 | 129 | Chr1: 24273910-24274038 | Arabidopsis thaliana |
AT1G65349:CDS:1 | 169 | Chr1: 24277072-24277240 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G65350:exon:2 | 103 | Chr1: 24272518-24272620 | Arabidopsis thaliana |
AT1G65350:exon:1 | 857 | Chr1: 24276419-24277275 | Arabidopsis thaliana |
AT1G65346:exon:2 | 240 | Chr1: 24273181-24273420 | Arabidopsis thaliana |
AT1G65346:exon:1 | 129 | Chr1: 24273910-24274038 | Arabidopsis thaliana |
AT1G65347:exon:1 | 794 | Chr1: 24274897-24275690 | Arabidopsis thaliana |
AT1G65349:exon:1 | 169 | Chr1: 24277072-24277240 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G65350 | locus:2206310 | UBQ13 | ubiquitin 13 | 4758 | Chr1: 24272518-24277275 | A. thaliana | ubiquitin 13;(source:Araport11) | polyubiquitin gene,Columbia ecotype revealed that the gene contained a 3.9-kb insertion in the coding region from mitochondrial DNA. | ubiquitin 13 | UBQ13 |
AT1G65346 | locus:5019474665 | AT1G65346 | 858 | Chr1: 24273181-24274038 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL | ||
AT1G65349 | AT1G65349 | 372 | Chr1: 24277072-24277443 | A. thaliana | hypothetical protein;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G65346.1 | 369 | Chr1: 24273181-24274038 |
AT1G65347.1 | 794 | Chr1: 24274897-24275690 |
AT1G65349.1 | 228 | Chr1: 24277072-24277443 |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE79810 | 570 | Chr1: 24275019-24275588 | Arabidopsis thaliana |
AT1TE79815 | 21 | Chr1: 24275589-24275609 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G65347 | locus:1006230783 | AT1G65347 | 794 | Chr1: 24274897-24275690 | A. thaliana | transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.5e-50 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE79810:transposon_fragment:1 | 570 | Chr1: 24275019-24275588 | Arabidopsis thaliana |
AT1TE79815:transposon_fragment:1 | 21 | Chr1: 24275589-24275609 | Arabidopsis thaliana |