Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposableElement
CDS: 1, Exon: 1, Five Prime UTR: 1, Gene: 1, Intergenic Regions: 2, mRNA: 1, Three Prime UTR: 1, Transposable Elements: 7, Transposon Fragments: 10
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G61840:CDS:1 | 2445 | Chr1: 22847389-22849833 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G61840:exon:1 | 2743 | Chr1: 22847247-22849989 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G61840:five_prime_UTR:1 | 142 | Chr1: 22847247-22847388 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G61840 | locus:2036888 | AT1G61840 | 2743 | Chr1: 22847247-22849989 | A. thaliana | Cysteine/Histidine-rich C1 domain family protein;(source:Araport11) | NULL | Cysteine/Histidine-rich C1 domain family protein |
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr1_22841898..22847246 | 5349 | Chr1: 22841898-22847246 | Arabidopsis thaliana |
intergenic_region_chrChr1_22849990..22855750 | 5761 | Chr1: 22849990-22855750 | Arabidopsis thaliana |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G61840:three_prime_UTR:1 | 156 | Chr1: 22849834-22849989 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE75310 | 129 | Chr1: 22849916-22850044 | Arabidopsis thaliana |
AT1TE75315 | 40 | Chr1: 22850149-22850188 | Arabidopsis thaliana |
AT1TE75320 | 152 | Chr1: 22850190-22850341 | Arabidopsis thaliana |
AT1TE75325 | 22 | Chr1: 22850608-22850629 | Arabidopsis thaliana |
AT1TE75330 | 1044 | Chr1: 22850636-22851679 | Arabidopsis thaliana |
AT1TE75335 | 227 | Chr1: 22851680-22851906 | Arabidopsis thaliana |
AT1TE75340 | 31 | Chr1: 22852922-22852952 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE75305:transposon_fragment:1 | 776 | Chr1: 22846336-22847111 | Arabidopsis thaliana |
AT1TE75305:transposon_fragment:2 | 1602 | Chr1: 22852953-22854554 | Arabidopsis thaliana |
AT1TE75310:transposon_fragment:1 | 129 | Chr1: 22849916-22850044 | Arabidopsis thaliana |
AT1TE75315:transposon_fragment:1 | 40 | Chr1: 22850149-22850188 | Arabidopsis thaliana |
AT1TE75320:transposon_fragment:1 | 152 | Chr1: 22850190-22850341 | Arabidopsis thaliana |
AT1TE75325:transposon_fragment:1 | 22 | Chr1: 22850608-22850629 | Arabidopsis thaliana |
AT1TE75330:transposon_fragment:1 | 1044 | Chr1: 22850636-22851679 | Arabidopsis thaliana |
AT1TE75335:transposon_fragment:1 | 227 | Chr1: 22851680-22851906 | Arabidopsis thaliana |
AT1TE75340:transposon_fragment:1 | 31 | Chr1: 22852922-22852952 | Arabidopsis thaliana |
AT1TE75340:transposon_fragment:2 | 27 | Chr1: 22852926-22852952 | Arabidopsis thaliana |