Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposableElement
CDSs: 2, Exons: 3, Five Prime UTRs: 3, Genes: 2, Intergenic Region: 1, mRNAs: 4, Transposable Element: 1, Transposon Fragments: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G58190:CDS:1 | 355 | Chr1: 21540720-21541074 | Arabidopsis thaliana |
AT1G58190:CDS:1.1 | 355 | Chr1: 21540720-21541074 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G58180:exon:1 | 343 | Chr1: 21539696-21540038 | Arabidopsis thaliana |
AT1G58190:exon:1 | 491 | Chr1: 21540584-21541074 | Arabidopsis thaliana |
AT1G58190:exon:2 | 443 | Chr1: 21540632-21541074 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G58180:five_prime_UTR:1 | 327 | Chr1: 21539712-21540038 | Arabidopsis thaliana |
AT1G58190:five_prime_UTR:1 | 136 | Chr1: 21540584-21540719 | Arabidopsis thaliana |
AT1G58190:five_prime_UTR:2 | 88 | Chr1: 21540632-21540719 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G58180 | locus:2196292 | BCA6 | beta carbonic anhydrase 6 | 2462 | Chr1: 21537577-21540038 | A. thaliana | beta carbonic anhydrase 6;(source:Araport11) | NULL | beta carbonic anhydrase 6 | ATBCA6, BCA6 |
AT1G58190 | locus:2196302 | RLP9 | receptor like protein 9 | 7536 | Chr1: 21540584-21548119 | A. thaliana | receptor like protein 9;(source:Araport11) | NULL | receptor like protein 9 | AtRLP9, RLP9 |
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr1_21540039..21540583 | 545 | Chr1: 21540039-21540583 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G58180.2 | 1633 | Chr1: 21537577-21540038 |
AT1G58180.5 | 1733 | Chr1: 21537577-21540038 |
AT1G58190.1 | 3168 | Chr1: 21540584-21544563 |
AT1G58190.2 | 3294 | Chr1: 21540632-21548112 |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE71085 | 317 | Chr1: 21540215-21540531 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE71080:transposon_fragment:2 | 205 | Chr1: 21540010-21540214 | Arabidopsis thaliana |
AT1TE71080:transposon_fragment:1 | 219 | Chr1: 21540532-21540750 | Arabidopsis thaliana |
AT1TE71085:transposon_fragment:1 | 317 | Chr1: 21540215-21540531 | Arabidopsis thaliana |