Genomics
Transcript | Exons | Introns | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NF-YA5
AT1G54160.1
1462 |
|
|
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54160:CDS:3 | 294 | Chr1: 20217581-20217874 | Arabidopsis thaliana |
AT1G54160:CDS:2 | 174 | Chr1: 20217989-20218162 | Arabidopsis thaliana |
AT1G54160:CDS:1 | 459 | Chr1: 20218248-20218706 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54150:exon:8 | 463 | Chr1: 20217027-20217489 | Arabidopsis thaliana |
AT1G54160:exon:4 | 539 | Chr1: 20217336-20217874 | Arabidopsis thaliana |
AT1G54160:exon:3 | 174 | Chr1: 20217989-20218162 | Arabidopsis thaliana |
AT1G54160:exon:2 | 485 | Chr1: 20218248-20218732 | Arabidopsis thaliana |
AT1G54160:exon:1 | 264 | Chr1: 20219189-20219452 | Arabidopsis thaliana |
AT1G07943:exon:1 | 137 | Chr1: 20217732-20217868 | Arabidopsis thaliana |
AT1G07943:exon:2 | 261 | Chr1: 20217961-20218221 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54160:five_prime_UTR:2 | 26 | Chr1: 20218707-20218732 | Arabidopsis thaliana |
AT1G54160:five_prime_UTR:1 | 264 | Chr1: 20219189-20219452 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G54150 | locus:2014405 | SPL2 | SP1-like 2 | 2095 | Chr1: 20215395-20217489 | A. thaliana | E3 Ubiquitin ligase family protein;(source:Araport11) | Encodes a chloroplast-localized putative RING-type ubiquitin E3 ligase. | E3 Ubiquitin ligase family protein | SPL2 |
AT1G54160 | locus:2014375 | NF-YA5 | nuclear factor Y, subunit A5 | 2117 | Chr1: 20217336-20219452 | A. thaliana | nuclear factor Y, subunit A5;(source:Araport11) | Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought. | nuclear factor Y, subunit A5 | NF-YA5, NFYA5 |
AT1G07943 | AT1G07943 | 490 | Chr1: 20217732-20218221 | A. thaliana | Natural antisense transcript overlaps with AT1G54160;(source:Araport11) | NULL |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54150:three_prime_UTR:1 | 186 | Chr1: 20217304-20217489 | Arabidopsis thaliana |
AT1G54160:three_prime_UTR:1 | 245 | Chr1: 20217336-20217580 | Arabidopsis thaliana |