Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposableElement
Exons: 23, Intergenic Regions: 6, mRNAs: 5, Pseudogene: 1, Pseudogenic Exon: 1, Pseudogenic Transcript: 1, Transposable Element Genes: 5, Transposon Fragment: 1
Exons
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr1_12713571..12714208 | 638 | Chr1: 12713571-12714208 | Arabidopsis thaliana |
intergenic_region_chrChr1_12717182..12717729 | 548 | Chr1: 12717182-12717729 | Arabidopsis thaliana |
intergenic_region_chrChr1_12718679..12719356 | 678 | Chr1: 12718679-12719356 | Arabidopsis thaliana |
intergenic_region_chrChr1_12719888..12720885 | 998 | Chr1: 12719888-12720885 | Arabidopsis thaliana |
intergenic_region_chrChr1_12721378..12722223 | 846 | Chr1: 12721378-12722223 | Arabidopsis thaliana |
intergenic_region_chrChr1_12728190..12735999 | 7810 | Chr1: 12728190-12735999 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G34700.1 | 2973 | Chr1: 12714209-12717181 |
AT1G34710.1 | 708 | Chr1: 12717730-12718678 |
AT1G34720.1 | 531 | Chr1: 12719357-12719887 |
AT1G34730.1 | 492 | Chr1: 12720886-12721377 |
AT1G34740.1 | 4152 | Chr1: 12722224-12728189 |
Pseudogenes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G34690 | locus:3433601 | AT1G34690 | 381 | Chr1: 12713190-12713570 | A. thaliana | pseudogene of maturase K;(source:Araport11) | NULL | NULL |
Pseudogenic Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G34690:pseudogenic_exon:1 | 381 | Chr1: 12713190-12713570 | Arabidopsis thaliana |
Pseudogenic Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G34690.1 | 381 | Chr1: 12713190-12713570 |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G34700 | locus:2023921 | AT1G34700 | 2973 | Chr1: 12714209-12717181 | A. thaliana | transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.6e-83 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10) | NULL | transposable element gene | ||
AT1G34710 | locus:2023958 | AT1G34710 | 949 | Chr1: 12717730-12718678 | A. thaliana | transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14780.1);(source:TAIR10) | NULL | transposable element gene | ||
AT1G34720 | locus:2023944 | AT1G34720 | 531 | Chr1: 12719357-12719887 | A. thaliana | transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27800.1);(source:TAIR10) | NULL | transposable element gene | ||
AT1G34730 | locus:2023937 | AT1G34730 | 492 | Chr1: 12720886-12721377 | A. thaliana | transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36840.1);(source:TAIR10) | NULL | transposable element gene | ||
AT1G34740 | locus:2008346 | AT1G34740 | 5966 | Chr1: 12722224-12728189 | A. thaliana | transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE41460:transposon_fragment:1 | 15058 | Chr1: 12713488-12728545 | Arabidopsis thaliana |