Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 25, Exons: 13, Five Prime UTRs: 3, Gene: 1, mRNAs: 2, Three Prime UTRs: 2, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17460:CDS:1 | 120 | Chr1: 5999519-5999638 | Arabidopsis thaliana |
AT1G17460:CDS:2 | 175 | Chr1: 5999777-5999951 | Arabidopsis thaliana |
AT1G17460:CDS:4 | 59 | Chr1: 6000287-6000345 | Arabidopsis thaliana |
AT1G17460:CDS:6 | 789 | Chr1: 6000532-6001320 | Arabidopsis thaliana |
AT1G17460:CDS:7 | 135 | Chr1: 6001534-6001668 | Arabidopsis thaliana |
AT1G17460:CDS:8 | 276 | Chr1: 6001909-6002184 | Arabidopsis thaliana |
AT1G17460:CDS:9 | 45 | Chr1: 6002266-6002310 | Arabidopsis thaliana |
AT1G17460:CDS:10 | 153 | Chr1: 6002394-6002546 | Arabidopsis thaliana |
AT1G17460:CDS:1.1 | 120 | Chr1: 5999519-5999638 | Arabidopsis thaliana |
AT1G17460:CDS:2.1 | 175 | Chr1: 5999777-5999951 | Arabidopsis thaliana |
AT1G17460:CDS:4.1 | 59 | Chr1: 6000287-6000345 | Arabidopsis thaliana |
AT1G17460:CDS:5 | 852 | Chr1: 6000469-6001320 | Arabidopsis thaliana |
AT1G17460:CDS:7.1 | 135 | Chr1: 6001534-6001668 | Arabidopsis thaliana |
AT1G17460:CDS:8.1 | 276 | Chr1: 6001909-6002184 | Arabidopsis thaliana |
AT1G17460:CDS:9.1 | 45 | Chr1: 6002266-6002310 | Arabidopsis thaliana |
AT1G17460:CDS:10.1 | 153 | Chr1: 6002394-6002546 | Arabidopsis thaliana |
AT1G17460:CDS:1.2 | 120 | Chr1: 5999519-5999638 | Arabidopsis thaliana |
AT1G17460:CDS:2.2 | 175 | Chr1: 5999777-5999951 | Arabidopsis thaliana |
AT1G17460:CDS:3 | 60 | Chr1: 6000050-6000109 | Arabidopsis thaliana |
AT1G17460:CDS:4.2 | 59 | Chr1: 6000287-6000345 | Arabidopsis thaliana |
AT1G17460:CDS:5.1 | 852 | Chr1: 6000469-6001320 | Arabidopsis thaliana |
AT1G17460:CDS:7.2 | 135 | Chr1: 6001534-6001668 | Arabidopsis thaliana |
AT1G17460:CDS:8.2 | 276 | Chr1: 6001909-6002184 | Arabidopsis thaliana |
AT1G17460:CDS:9.2 | 45 | Chr1: 6002266-6002310 | Arabidopsis thaliana |
AT1G17460:CDS:10.2 | 153 | Chr1: 6002394-6002546 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17460:exon:8 | 789 | Chr1: 6000532-6001320 | Arabidopsis thaliana |
AT1G17460:exon:1 | 208 | Chr1: 5998765-5998972 | Arabidopsis thaliana |
AT1G17460:exon:13 | 339 | Chr1: 6002394-6002732 | Arabidopsis thaliana |
AT1G17460:exon:2 | 159 | Chr1: 5998814-5998972 | Arabidopsis thaliana |
AT1G17460:exon:3 | 150 | Chr1: 5999489-5999638 | Arabidopsis thaliana |
AT1G17460:exon:4 | 175 | Chr1: 5999777-5999951 | Arabidopsis thaliana |
AT1G17460:exon:5 | 60 | Chr1: 6000050-6000109 | Arabidopsis thaliana |
AT1G17460:exon:6 | 59 | Chr1: 6000287-6000345 | Arabidopsis thaliana |
AT1G17460:exon:7 | 852 | Chr1: 6000469-6001320 | Arabidopsis thaliana |
AT1G17460:exon:9 | 135 | Chr1: 6001534-6001668 | Arabidopsis thaliana |
AT1G17460:exon:10 | 276 | Chr1: 6001909-6002184 | Arabidopsis thaliana |
AT1G17460:exon:11 | 45 | Chr1: 6002266-6002310 | Arabidopsis thaliana |
AT1G17460:exon:12 | 323 | Chr1: 6002394-6002716 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17460:five_prime_UTR:1 | 208 | Chr1: 5998765-5998972 | Arabidopsis thaliana |
AT1G17460:five_prime_UTR:2 | 159 | Chr1: 5998814-5998972 | Arabidopsis thaliana |
AT1G17460:five_prime_UTR:3 | 30 | Chr1: 5999489-5999518 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G17460 | locus:2018815 | TRFL3 | TRF-like 3 | 3968 | Chr1: 5998765-6002732 | A. thaliana | TRF-like 3;(source:Araport11) | Arabidopsis thaliana myb family transcription factor (At1g17460) | TRF-like 3 | TRFL3 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G17460.3 | 2176 | Chr1: 5998765-6002732 |
AT1G17460.1 | 2239 | Chr1: 5998765-6002732 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G17460:three_prime_UTR:2 | 186 | Chr1: 6002547-6002732 | Arabidopsis thaliana |
AT1G17460:three_prime_UTR:1 | 170 | Chr1: 6002547-6002716 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE19400 | 89 | Chr1: 5999194-5999282 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE19400:transposon_fragment:1 | 89 | Chr1: 5999194-5999282 | Arabidopsis thaliana |