Genomics
Gene models -
Gene models
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Overlapping Features
Genome features that overlap coordinates of this ThreePrimeUTR
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08620:exon:17 | 666 | Chr1: 2743059-2743724 | Arabidopsis thaliana |
AT1G08620:exon:18 | 709 | Chr1: 2743059-2743767 | Arabidopsis thaliana |
AT1G08620:exon:19 | 823 | Chr1: 2743059-2743881 | Arabidopsis thaliana |
AT1G08630:exon:17 | 226 | Chr1: 2743761-2743986 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G08620 | locus:2025635 | PKDM7D | 7226 | Chr1: 2736656-2743881 | A. thaliana | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11) | Member of family of Jumonji C (JmjC)-containing demethylases, its catalytic domain exhibits both H3K4 and H3K9 demethylation activities. Together with MMD1 promotes in male meiocytes gene expression in an H3K9me3-dependent manner and thereby contributes to meiotic chromosome condensation. | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | JMJ16, PKDM7D | |
AT1G08630 | locus:2025645 | THA1 | threonine aldolase 1 | 4207 | Chr1: 2743761-2747967 | A. thaliana | threonine aldolase 1;(source:Araport11) | Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. | threonine aldolase 1 | THA1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G08620.2 | 4422 | Chr1: 2736656-2743881 |
AT1G08620.3 | 4483 | Chr1: 2736836-2743724 |
AT1G08620.4 | 4531 | Chr1: 2736854-2743767 |
AT1G08620.1 | 4426 | Chr1: 2736854-2743881 |
AT1G08630.4 | 1404 | Chr1: 2743761-2746526 |
AT1G08630.3 | 1466 | Chr1: 2743761-2746740 |
AT1G08630.1 | 1870 | Chr1: 2743761-2747243 |
AT1G08630.6 | 1393 | Chr1: 2743761-2747936 |
AT1G08630.7 | 1354 | Chr1: 2743761-2747936 |
AT1G08630.5 | 1391 | Chr1: 2743761-2747967 |
AT1G08630.2 | 1433 | Chr1: 2743761-2747967 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08620:three_prime_UTR:1 | 354 | Chr1: 2743371-2743724 | Arabidopsis thaliana |
AT1G08620:three_prime_UTR:2 | 397 | Chr1: 2743371-2743767 | Arabidopsis thaliana |
AT1G08630:three_prime_UTR:1 | 187 | Chr1: 2743761-2743947 | Arabidopsis thaliana |