Genomics
Transcript | Exons | Introns | ||||||
---|---|---|---|---|---|---|---|---|
AT1G08610.1
AT1G08610.1
2143 |
|
|
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08610:CDS:1 | 1680 | Chr1: 2733788-2735467 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08600:exon:32 | 564 | Chr1: 2733050-2733613 | Arabidopsis thaliana |
AT1G08610:exon:2 | 2039 | Chr1: 2733596-2735634 | Arabidopsis thaliana |
AT1G08610:exon:1 | 104 | Chr1: 2735716-2735819 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08610:five_prime_UTR:2 | 167 | Chr1: 2735468-2735634 | Arabidopsis thaliana |
AT1G08610:five_prime_UTR:1 | 104 | Chr1: 2735716-2735819 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G08600 | locus:2025560 | ATRX | 9937 | Chr1: 2723677-2733613 | A. thaliana | P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11) | The Arabidopsis ATRX harbours a N-terminal ADD domain and a C-terminal helicase domain and is devoid of the large central region involved in DAXX interaction in mammals. Arabidopsis ATRX mutant alleles are viable, but with reduced fertility. Their combination with mutants for the H3.3 chaperone HIRA impairs plant survival. ATRX loss affects cellular histone H3.3 pools and modulates the H3.1/H3.3 balance. Notably, at a genome-wide scale, loss of ATRX leads to a reduced H3.3 level at genes characterized by elevated H3.3 occupancy and high expression, including the 45S ribosomal DNA (45S rDNA) loci. Indeed, expression of specific 45S rDNA sequence variants is altered by ATRX loss (DOI:10.1105/tpc.16.00877) | P-loop containing nucleoside triphosphate hydrolases superfamily protein | ATRX, CHR20 | |
AT1G08610 | locus:2025580 | AT1G08610 | 2224 | Chr1: 2733596-2735819 | A. thaliana | Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11) | NULL | Pentatricopeptide repeat (PPR) superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G08600.3 | 5000 | Chr1: 2723677-2733613 |
AT1G08600.2 | 4869 | Chr1: 2723824-2733613 |
AT1G08600.4 | 4872 | Chr1: 2723824-2733613 |
AT1G08600.1 | 4809 | Chr1: 2723824-2733613 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G08600:three_prime_UTR:1 | 182 | Chr1: 2733432-2733613 | Arabidopsis thaliana |
AT1G08610:three_prime_UTR:1 | 192 | Chr1: 2733596-2733787 | Arabidopsis thaliana |