Genomics
Genome feature
| Region: |
mRNA
|
Length: |
772
 |
| Location: | Chr1:1730242-1732657 | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G05785:CDS:2 |
102
|
Chr1: 1731284-1731385 | Arabidopsis thaliana |
| AT1G05785:CDS:4 |
81
|
Chr1: 1731467-1731547 | Arabidopsis thaliana |
| AT1G05785:CDS:5 |
98
|
Chr1: 1731631-1731728 | Arabidopsis thaliana |
| AT1G05785:CDS:6 |
76
|
Chr1: 1732014-1732089 | Arabidopsis thaliana |
| AT1G05785:CDS:9 |
33
|
Chr1: 1732374-1732406 | Arabidopsis thaliana |
| AT1G05785:CDS:1 |
28
|
Chr1: 1730981-1731008 | Arabidopsis thaliana |
| AT1G05785:CDS:3 |
92
|
Chr1: 1731294-1731385 | Arabidopsis thaliana |
| AT1G05785:CDS:4.1 |
81
|
Chr1: 1731467-1731547 | Arabidopsis thaliana |
| AT1G05785:CDS:5.1 |
98
|
Chr1: 1731631-1731728 | Arabidopsis thaliana |
| AT1G05785:CDS:6.1 |
76
|
Chr1: 1732014-1732089 | Arabidopsis thaliana |
| AT1G05785:CDS:8 |
27
|
Chr1: 1732158-1732184 | Arabidopsis thaliana |
| AT1G05785:CDS:1.1 |
28
|
Chr1: 1730981-1731008 | Arabidopsis thaliana |
| AT1G05785:CDS:3.1 |
92
|
Chr1: 1731294-1731385 | Arabidopsis thaliana |
| AT1G05785:CDS:4.2 |
81
|
Chr1: 1731467-1731547 | Arabidopsis thaliana |
| AT1G05785:CDS:5.2 |
98
|
Chr1: 1731631-1731728 | Arabidopsis thaliana |
| AT1G05785:CDS:6.2 |
76
|
Chr1: 1732014-1732089 | Arabidopsis thaliana |
| AT1G05785:CDS:9.1 |
33
|
Chr1: 1732374-1732406 | Arabidopsis thaliana |
| AT1G05785:CDS:1.2 |
28
|
Chr1: 1730981-1731008 | Arabidopsis thaliana |
| AT1G05785:CDS:3.2 |
92
|
Chr1: 1731294-1731385 | Arabidopsis thaliana |
| AT1G05785:CDS:4.3 |
81
|
Chr1: 1731467-1731547 | Arabidopsis thaliana |
| AT1G05785:CDS:5.3 |
98
|
Chr1: 1731631-1731728 | Arabidopsis thaliana |
| AT1G05785:CDS:7 |
223
|
Chr1: 1732014-1732236 | Arabidopsis thaliana |
| AT1G05785:CDS:1.3 |
28
|
Chr1: 1730981-1731008 | Arabidopsis thaliana |
| AT1G05785:CDS:3.3 |
92
|
Chr1: 1731294-1731385 | Arabidopsis thaliana |
| AT1G05785:CDS:4.4 |
81
|
Chr1: 1731467-1731547 | Arabidopsis thaliana |
| AT1G05785:CDS:5.4 |
98
|
Chr1: 1731631-1731728 | Arabidopsis thaliana |
| AT1G05785:CDS:6.3 |
76
|
Chr1: 1732014-1732089 | Arabidopsis thaliana |
| AT1G05785:CDS:9.2 |
33
|
Chr1: 1732374-1732406 | Arabidopsis thaliana |
| AT1G05785:CDS:1.4 |
28
|
Chr1: 1730981-1731008 | Arabidopsis thaliana |
| AT1G05785:CDS:3.4 |
92
|
Chr1: 1731294-1731385 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G05785:exon:6 |
464
|
Chr1: 1730922-1731385 | Arabidopsis thaliana |
| AT1G05785:exon:15 |
251
|
Chr1: 1732374-1732624 | Arabidopsis thaliana |
| AT1G05785:exon:14 |
482
|
Chr1: 1732158-1732639 | Arabidopsis thaliana |
| AT1G05785:exon:1 |
91
|
Chr1: 1730242-1730332 | Arabidopsis thaliana |
| AT1G05785:exon:7 |
50
|
Chr1: 1730959-1731008 | Arabidopsis thaliana |
| AT1G05785:exon:13 |
644
|
Chr1: 1732014-1732657 | Arabidopsis thaliana |
| AT1G05785:exon:2 |
90
|
Chr1: 1730243-1730332 | Arabidopsis thaliana |
| AT1G05785:exon:3 |
766
|
Chr1: 1730243-1731008 | Arabidopsis thaliana |
| AT1G05785:exon:11 |
76
|
Chr1: 1732014-1732089 | Arabidopsis thaliana |
| AT1G05785:exon:16 |
284
|
Chr1: 1732374-1732657 | Arabidopsis thaliana |
| AT1G05785:exon:4 |
34
|
Chr1: 1730299-1730332 | Arabidopsis thaliana |
| AT1G05785:exon:5 |
87
|
Chr1: 1730922-1731008 | Arabidopsis thaliana |
| AT1G05785:exon:8 |
92
|
Chr1: 1731294-1731385 | Arabidopsis thaliana |
| AT1G05785:exon:9 |
81
|
Chr1: 1731467-1731547 | Arabidopsis thaliana |
| AT1G05785:exon:10 |
98
|
Chr1: 1731631-1731728 | Arabidopsis thaliana |
| AT1G05785:exon:12 |
228
|
Chr1: 1732014-1732241 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G05785:five_prime_UTR:6 |
362
|
Chr1: 1730922-1731283 | Arabidopsis thaliana |
| AT1G05785:five_prime_UTR:1 |
91
|
Chr1: 1730242-1730332 | Arabidopsis thaliana |
| AT1G05785:five_prime_UTR:7 |
22
|
Chr1: 1730959-1730980 | Arabidopsis thaliana |
| AT1G05785:five_prime_UTR:2 |
90
|
Chr1: 1730243-1730332 | Arabidopsis thaliana |
| AT1G05785:five_prime_UTR:3 |
738
|
Chr1: 1730243-1730980 | Arabidopsis thaliana |
| AT1G05785:five_prime_UTR:4 |
34
|
Chr1: 1730299-1730332 | Arabidopsis thaliana |
| AT1G05785:five_prime_UTR:5 |
59
|
Chr1: 1730922-1730980 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT1G05785 | locus:504956158 | AT1G05785 |
2416
|
Chr1: 1730242-1732657 | A. thaliana | Got1/Sft2-like vescicle transport protein family;(source:Araport11) | NULL | Got1/Sft2-like vescicle transport protein family |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT1G05785.3 |
1061
|
Chr1: 1730242-1732624 |
| AT1G05785.4 |
970
|
Chr1: 1730242-1732639 |
| AT1G05785.6 |
1055
|
Chr1: 1730243-1732657 |
| AT1G05785.2 |
808
|
Chr1: 1730243-1732657 |
| AT1G05785.5 |
1397
|
Chr1: 1730243-1732657 |
| AT1G05785.7 |
620
|
Chr1: 1730299-1732241 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G05785:three_prime_UTR:4 |
218
|
Chr1: 1732407-1732624 | Arabidopsis thaliana |
| AT1G05785:three_prime_UTR:1 |
455
|
Chr1: 1732185-1732639 | Arabidopsis thaliana |
| AT1G05785:three_prime_UTR:3 |
421
|
Chr1: 1732237-1732657 | Arabidopsis thaliana |
| AT1G05785:three_prime_UTR:5 |
251
|
Chr1: 1732407-1732657 | Arabidopsis thaliana |
| AT1G05785:three_prime_UTR:2 |
5
|
Chr1: 1732237-1732241 | Arabidopsis thaliana |
