Genomics
Genome feature
| Region: |
mRNA
|
Length: |
1690
 |
| Location: | Chr1:655568-658190 reverse strand | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G02910:CDS:7 |
213
|
Chr1: 656293-656505 | Arabidopsis thaliana |
| AT1G02910:CDS:5 |
158
|
Chr1: 656588-656745 | Arabidopsis thaliana |
| AT1G02910:CDS:4 |
232
|
Chr1: 656827-657058 | Arabidopsis thaliana |
| AT1G02910:CDS:3 |
136
|
Chr1: 657142-657277 | Arabidopsis thaliana |
| AT1G02910:CDS:2 |
104
|
Chr1: 657392-657495 | Arabidopsis thaliana |
| AT1G02910:CDS:1 |
270
|
Chr1: 657856-658125 | Arabidopsis thaliana |
| AT1G02910:CDS:10 |
75
|
Chr1: 655749-655823 | Arabidopsis thaliana |
| AT1G02910:CDS:9 |
97
|
Chr1: 655933-656029 | Arabidopsis thaliana |
| AT1G02910:CDS:8 |
101
|
Chr1: 656134-656234 | Arabidopsis thaliana |
| AT1G02910:CDS:6 |
189
|
Chr1: 656317-656505 | Arabidopsis thaliana |
| AT1G02910:CDS:5.1 |
158
|
Chr1: 656588-656745 | Arabidopsis thaliana |
| AT1G02910:CDS:4.1 |
232
|
Chr1: 656827-657058 | Arabidopsis thaliana |
| AT1G02910:CDS:3.1 |
136
|
Chr1: 657142-657277 | Arabidopsis thaliana |
| AT1G02910:CDS:2.1 |
104
|
Chr1: 657392-657495 | Arabidopsis thaliana |
| AT1G02910:CDS:1.1 |
270
|
Chr1: 657856-658125 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G02910:exon:8 |
372
|
Chr1: 656134-656505 | Arabidopsis thaliana |
| AT1G02910:exon:2 |
335
|
Chr1: 657856-658190 | Arabidopsis thaliana |
| AT1G02910:exon:11 |
256
|
Chr1: 655568-655823 | Arabidopsis thaliana |
| AT1G02910:exon:10 |
97
|
Chr1: 655933-656029 | Arabidopsis thaliana |
| AT1G02910:exon:9 |
101
|
Chr1: 656134-656234 | Arabidopsis thaliana |
| AT1G02910:exon:7 |
189
|
Chr1: 656317-656505 | Arabidopsis thaliana |
| AT1G02910:exon:6 |
158
|
Chr1: 656588-656745 | Arabidopsis thaliana |
| AT1G02910:exon:5 |
232
|
Chr1: 656827-657058 | Arabidopsis thaliana |
| AT1G02910:exon:4 |
136
|
Chr1: 657142-657277 | Arabidopsis thaliana |
| AT1G02910:exon:3 |
104
|
Chr1: 657392-657495 | Arabidopsis thaliana |
| AT1G02910:exon:1 |
361
|
Chr1: 657856-658216 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G02910:five_prime_UTR:2 |
65
|
Chr1: 658126-658190 | Arabidopsis thaliana |
| AT1G02910:five_prime_UTR:1 |
91
|
Chr1: 658126-658216 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT1G02910 | locus:2024720 | LPA1 | LOW PSII ACCUMULATION1 |
2649
|
Chr1: 655568-658216 | A. thaliana | tetratricopeptide repeat (TPR)-containing protein;(source:Araport11) | Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. | tetratricopeptide repeat (TPR)-containing protein | LPA1 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G02910:three_prime_UTR:3 |
256
|
Chr1: 655568-655823 | Arabidopsis thaliana |
| AT1G02910:three_prime_UTR:2 |
97
|
Chr1: 655933-656029 | Arabidopsis thaliana |
| AT1G02910:three_prime_UTR:1 |
159
|
Chr1: 656134-656292 | Arabidopsis thaliana |
| AT1G02910:three_prime_UTR:4 |
181
|
Chr1: 655568-655748 | Arabidopsis thaliana |
