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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G60980:CDS:1 |
180
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Chr5: 24543988-24544167 | Arabidopsis thaliana |
AT5G60980:CDS:2 |
298
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Chr5: 24544258-24544555 | Arabidopsis thaliana |
AT5G60980:CDS:3 |
221
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Chr5: 24544656-24544876 | Arabidopsis thaliana |
AT5G60980:CDS:4 |
169
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Chr5: 24544977-24545145 | Arabidopsis thaliana |
AT5G60980:CDS:5 |
122
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Chr5: 24545231-24545352 | Arabidopsis thaliana |
AT5G60980:CDS:6 |
66
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Chr5: 24545429-24545494 | Arabidopsis thaliana |
AT5G60980:CDS:8 |
64
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Chr5: 24545605-24545668 | Arabidopsis thaliana |
AT5G60980:CDS:9 |
263
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Chr5: 24545765-24546027 | Arabidopsis thaliana |
AT5G60980:CDS:1.1 |
180
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Chr5: 24543988-24544167 | Arabidopsis thaliana |
AT5G60980:CDS:2.1 |
298
![]() |
Chr5: 24544258-24544555 | Arabidopsis thaliana |
AT5G60980:CDS:3.1 |
221
![]() |
Chr5: 24544656-24544876 | Arabidopsis thaliana |
AT5G60980:CDS:4.1 |
169
![]() |
Chr5: 24544977-24545145 | Arabidopsis thaliana |
AT5G60980:CDS:5.1 |
122
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Chr5: 24545231-24545352 | Arabidopsis thaliana |
AT5G60980:CDS:6.1 |
66
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Chr5: 24545429-24545494 | Arabidopsis thaliana |
AT5G60980:CDS:8.1 |
64
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Chr5: 24545605-24545668 | Arabidopsis thaliana |
AT5G60980:CDS:9.1 |
263
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Chr5: 24545765-24546027 | Arabidopsis thaliana |
AT5G60980:CDS:1.2 |
180
![]() |
Chr5: 24543988-24544167 | Arabidopsis thaliana |
AT5G60980:CDS:2.2 |
298
![]() |
Chr5: 24544258-24544555 | Arabidopsis thaliana |
AT5G60980:CDS:3.2 |
221
![]() |
Chr5: 24544656-24544876 | Arabidopsis thaliana |
AT5G60980:CDS:4.2 |
169
![]() |
Chr5: 24544977-24545145 | Arabidopsis thaliana |
AT5G60980:CDS:5.2 |
122
![]() |
Chr5: 24545231-24545352 | Arabidopsis thaliana |
AT5G60980:CDS:7 |
63
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Chr5: 24545432-24545494 | Arabidopsis thaliana |
AT5G60980:CDS:8.2 |
64
![]() |
Chr5: 24545605-24545668 | Arabidopsis thaliana |
AT5G60980:CDS:9.2 |
263
![]() |
Chr5: 24545765-24546027 | Arabidopsis thaliana |
AT5G60980:CDS:1.3 |
180
![]() |
Chr5: 24543988-24544167 | Arabidopsis thaliana |
AT5G60980:CDS:2.3 |
298
![]() |
Chr5: 24544258-24544555 | Arabidopsis thaliana |
AT5G60980:CDS:3.3 |
221
![]() |
Chr5: 24544656-24544876 | Arabidopsis thaliana |
AT5G60980:CDS:4.3 |
169
![]() |
Chr5: 24544977-24545145 | Arabidopsis thaliana |
AT5G60980:CDS:5.3 |
122
![]() |
Chr5: 24545231-24545352 | Arabidopsis thaliana |
AT5G60980:CDS:7.1 |
63
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Chr5: 24545432-24545494 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G60980:exon:1 |
344
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Chr5: 24543136-24543479 | Arabidopsis thaliana |
AT5G60980:exon:15 |
588
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Chr5: 24545765-24546352 | Arabidopsis thaliana |
AT5G60980:exon:3 |
932
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Chr5: 24543236-24544167 | Arabidopsis thaliana |
AT5G60980:exon:10 |
66
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Chr5: 24545429-24545494 | Arabidopsis thaliana |
AT5G60980:exon:2 |
244
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Chr5: 24543236-24543479 | Arabidopsis thaliana |
AT5G60980:exon:5 |
180
![]() |
Chr5: 24543988-24544167 | Arabidopsis thaliana |
AT5G60980:exon:14 |
553
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Chr5: 24545765-24546317 | Arabidopsis thaliana |
AT5G60980:exon:4 |
586
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Chr5: 24543582-24544167 | Arabidopsis thaliana |
AT5G60980:exon:6 |
298
![]() |
Chr5: 24544258-24544555 | Arabidopsis thaliana |
AT5G60980:exon:7 |
221
![]() |
Chr5: 24544656-24544876 | Arabidopsis thaliana |
AT5G60980:exon:8 |
169
![]() |
Chr5: 24544977-24545145 | Arabidopsis thaliana |
AT5G60980:exon:9 |
122
![]() |
Chr5: 24545231-24545352 | Arabidopsis thaliana |
AT5G60980:exon:11 |
63
![]() |
Chr5: 24545432-24545494 | Arabidopsis thaliana |
AT5G60980:exon:12 |
64
![]() |
Chr5: 24545605-24545668 | Arabidopsis thaliana |
AT5G60980:exon:13 |
505
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Chr5: 24545765-24546269 | Arabidopsis thaliana |
AT5G60990:exon:13 |
416
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Chr5: 24546329-24546744 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G60980:five_prime_UTR:1 |
344
![]() |
Chr5: 24543136-24543479 | Arabidopsis thaliana |
AT5G60980:five_prime_UTR:3 |
752
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Chr5: 24543236-24543987 | Arabidopsis thaliana |
AT5G60980:five_prime_UTR:2 |
244
![]() |
Chr5: 24543236-24543479 | Arabidopsis thaliana |
AT5G60980:five_prime_UTR:4 |
406
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Chr5: 24543582-24543987 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G60990 | locus:2173517 | AT5G60990 |
3011
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Chr5: 24546329-24549339 | A. thaliana | DEA(D/H)-box RNA helicase family protein;(source:Araport11) | NULL | DEA(D/H)-box RNA helicase family protein | RH10 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G60980.2 |
2052
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Chr5: 24543136-24546352 |
AT5G60980.3 |
2425
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Chr5: 24543236-24546317 |
AT5G60980.1 |
1914
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Chr5: 24543236-24546317 |
AT5G60980.4 |
2028
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Chr5: 24543582-24546269 |
AT5G60990.1 |
1834
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Chr5: 24546329-24549339 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G60980:three_prime_UTR:3 |
325
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Chr5: 24546028-24546352 | Arabidopsis thaliana |
AT5G60980:three_prime_UTR:2 |
290
![]() |
Chr5: 24546028-24546317 | Arabidopsis thaliana |
AT5G60980:three_prime_UTR:1 |
242
![]() |
Chr5: 24546028-24546269 | Arabidopsis thaliana |
AT5G60990:three_prime_UTR:1 |
272
![]() |
Chr5: 24546329-24546600 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
NTF2_ARATH NTF2_ARATH-2 | function | Involved in RNA-directed DNA methylation (RdDM). |
Function
Gene Ontology
cellular component | |
---|---|
nucleus
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ECO |
plastid
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ECO |
cytoplasm
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ECO |
molecular function | |
mRNA binding
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ECO |
biological process | |
regulatory ncRNA-mediated gene silencing
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ECO |
Interactions
Interaction Network
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