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Gene : AT5G63440 A. thaliana

DB identifier  ? AT5G63440 Secondary Identifier  ? locus:2167361
Brief Description  hypothetical protein (DUF167)
TAIR Computational Description  hypothetical protein (DUF167);(source:Araport11)
TAIR Curator Summary  Encodes a single copy protein in Arabidopsis containing a DUF167 domain that is conserved in eukaryotes. Genetically CSU suppresses mutations in COP1. In vitro, it interacts with CACTIN and in vivo with CCA1. CSU4 promotes photomorphogenesis via negative regulation of CCA1 and PIF4 expression.
TAIR Short Description  Protein of unknown function (DUF167)
TAIR Aliases  CSU4

1 Gene Rifs

1 Organism

7 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2205  
Location: Chr5:25406252-25408456

Gene models - AT5G63440 AT5G63440

? Gene models

Transcripts: 3  Exons: 20  Introns: 17 

Overlapping Features

? Genome features that overlap coordinates of this Gene

15 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
Y6344_ARATH-2 Y6344_ARATH-3 Y6344_ARATH function May play a role during early embryonic development. Probably involved in pre-mRNA splicing (By similarity).
A0A7G2FK97_ARATH Y6344_ARATH-2 Y6344_ARATH-3 Y6344_ARATH similarity Belongs to the UPF0235 family.

4 Proteins

Function

Gene Ontology

cellular component
spliceosomal complex  ? ECO  
nucleus  ? ECO  
nuclear speck  ? ECO  
molecular function
No terms in this category.
biological process
RNA splicing  ? ECO  
mRNA processing  ? ECO  
circadian regulation of translation  ? ECO  
photomorphogenesis  ? ECO  
positive regulation of photomorphogenesis  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets