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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G57150:CDS:1 | 83 | Chr5: 23152361-23152443 | Arabidopsis thaliana |
AT5G57150:CDS:2 | 166 | Chr5: 23152523-23152688 | Arabidopsis thaliana |
AT5G57150:CDS:4 | 222 | Chr5: 23152770-23152991 | Arabidopsis thaliana |
AT5G57150:CDS:5 | 171 | Chr5: 23153084-23153254 | Arabidopsis thaliana |
AT5G57150:CDS:8 | 119 | Chr5: 23154156-23154274 | Arabidopsis thaliana |
AT5G57150:CDS:10 | 34 | Chr5: 23154768-23154801 | Arabidopsis thaliana |
AT5G57150:CDS:1.1 | 83 | Chr5: 23152361-23152443 | Arabidopsis thaliana |
AT5G57150:CDS:2.1 | 166 | Chr5: 23152523-23152688 | Arabidopsis thaliana |
AT5G57150:CDS:4.1 | 222 | Chr5: 23152770-23152991 | Arabidopsis thaliana |
AT5G57150:CDS:6 | 210 | Chr5: 23153084-23153293 | Arabidopsis thaliana |
AT5G57150:CDS:1.2 | 83 | Chr5: 23152361-23152443 | Arabidopsis thaliana |
AT5G57150:CDS:2.2 | 166 | Chr5: 23152523-23152688 | Arabidopsis thaliana |
AT5G57150:CDS:4.2 | 222 | Chr5: 23152770-23152991 | Arabidopsis thaliana |
AT5G57150:CDS:5.1 | 171 | Chr5: 23153084-23153254 | Arabidopsis thaliana |
AT5G57150:CDS:9 | 18 | Chr5: 23154539-23154556 | Arabidopsis thaliana |
AT5G57150:CDS:1.3 | 83 | Chr5: 23152361-23152443 | Arabidopsis thaliana |
AT5G57150:CDS:3 | 163 | Chr5: 23152526-23152688 | Arabidopsis thaliana |
AT5G57150:CDS:4.3 | 222 | Chr5: 23152770-23152991 | Arabidopsis thaliana |
AT5G57150:CDS:5.2 | 171 | Chr5: 23153084-23153254 | Arabidopsis thaliana |
AT5G57150:CDS:7 | 30 | Chr5: 23153535-23153564 | Arabidopsis thaliana |
AT5G57150:CDS:1.4 | 83 | Chr5: 23152361-23152443 | Arabidopsis thaliana |
AT5G57150:CDS:3.1 | 163 | Chr5: 23152526-23152688 | Arabidopsis thaliana |
AT5G57150:CDS:4.4 | 222 | Chr5: 23152770-23152991 | Arabidopsis thaliana |
AT5G57150:CDS:5.3 | 171 | Chr5: 23153084-23153254 | Arabidopsis thaliana |
AT5G57150:CDS:11 | 105 | Chr5: 23154768-23154872 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G57150:exon:1 | 270 | Chr5: 23152174-23152443 | Arabidopsis thaliana |
AT5G57150:exon:11 | 119 | Chr5: 23154156-23154274 | Arabidopsis thaliana |
AT5G57150:exon:13 | 174 | Chr5: 23154768-23154941 | Arabidopsis thaliana |
AT5G57150:exon:2 | 258 | Chr5: 23152186-23152443 | Arabidopsis thaliana |
AT5G57150:exon:9 | 1705 | Chr5: 23153084-23154788 | Arabidopsis thaliana |
AT5G57150:exon:3 | 134 | Chr5: 23152310-23152443 | Arabidopsis thaliana |
AT5G57150:exon:5 | 166 | Chr5: 23152523-23152688 | Arabidopsis thaliana |
AT5G57150:exon:12 | 237 | Chr5: 23154539-23154775 | Arabidopsis thaliana |
AT5G57150:exon:10 | 30 | Chr5: 23153535-23153564 | Arabidopsis thaliana |
AT5G57150:exon:4 | 125 | Chr5: 23152319-23152443 | Arabidopsis thaliana |
AT5G57150:exon:6 | 163 | Chr5: 23152526-23152688 | Arabidopsis thaliana |
AT5G57150:exon:7 | 222 | Chr5: 23152770-23152991 | Arabidopsis thaliana |
AT5G57150:exon:8 | 171 | Chr5: 23153084-23153254 | Arabidopsis thaliana |
AT5G57150:exon:14 | 299 | Chr5: 23154768-23155066 | Arabidopsis thaliana |
AT5G57160:exon:28 | 1077 | Chr5: 23154965-23156041 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G57150:five_prime_UTR:1 | 187 | Chr5: 23152174-23152360 | Arabidopsis thaliana |
AT5G57150:five_prime_UTR:2 | 175 | Chr5: 23152186-23152360 | Arabidopsis thaliana |
AT5G57150:five_prime_UTR:3 | 51 | Chr5: 23152310-23152360 | Arabidopsis thaliana |
AT5G57150:five_prime_UTR:4 | 42 | Chr5: 23152319-23152360 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G57160 | locus:2175544 | ATLIG4 | 6862 | Chr5: 23154965-23161826 | A. thaliana | DNA ligase IV;(source:Araport11) | Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV. Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration. Interacts with the Arabidopsis homologue of XRCC4. | DNA ligase IV | ATLIG4, LIG4 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G57150.4 | 1122 | Chr5: 23152174-23154941 |
AT5G57150.2 | 2351 | Chr5: 23152186-23154788 |
AT5G57150.3 | 930 | Chr5: 23152310-23154775 |
AT5G57150.5 | 711 | Chr5: 23152319-23153564 |
AT5G57150.1 | 980 | Chr5: 23152319-23155066 |
AT5G57160.1 | 3983 | Chr5: 23154965-23161826 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G57150:three_prime_UTR:3 | 140 | Chr5: 23154802-23154941 | Arabidopsis thaliana |
AT5G57150:three_prime_UTR:1 | 1495 | Chr5: 23153294-23154788 | Arabidopsis thaliana |
AT5G57150:three_prime_UTR:2 | 219 | Chr5: 23154557-23154775 | Arabidopsis thaliana |
AT5G57150:three_prime_UTR:4 | 194 | Chr5: 23154873-23155066 | Arabidopsis thaliana |
AT5G57160:three_prime_UTR:1 | 185 | Chr5: 23154965-23155149 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
BH035_ARATH-2 BH035_ARATH BH035_ARATH-3 | tissue specificity | Expressed constitutively in roots, leaves, stems, and flowers. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
sequence-specific DNA binding | ECO |
DNA-binding transcription factor activity | ECO |
protein dimerization activity | ECO |
biological process | |
regulation of DNA-templated transcription | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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