External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 21, Exons: 15, Five Prime UTRs: 3, Genes: 2, mRNAs: 3, Three Prime UTRs: 2, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42320:CDS:12 | 303 | Chr5: 16918651-16918953 | Arabidopsis thaliana |
AT5G42320:CDS:11 | 75 | Chr5: 16919047-16919121 | Arabidopsis thaliana |
AT5G42320:CDS:10 | 73 | Chr5: 16919207-16919279 | Arabidopsis thaliana |
AT5G42320:CDS:9 | 140 | Chr5: 16919449-16919588 | Arabidopsis thaliana |
AT5G42320:CDS:8 | 126 | Chr5: 16919795-16919920 | Arabidopsis thaliana |
AT5G42320:CDS:7 | 56 | Chr5: 16920016-16920071 | Arabidopsis thaliana |
AT5G42320:CDS:6 | 70 | Chr5: 16920155-16920224 | Arabidopsis thaliana |
AT5G42320:CDS:5 | 138 | Chr5: 16920315-16920452 | Arabidopsis thaliana |
AT5G42320:CDS:4 | 111 | Chr5: 16920614-16920724 | Arabidopsis thaliana |
AT5G42320:CDS:3 | 48 | Chr5: 16920798-16920845 | Arabidopsis thaliana |
AT5G42320:CDS:12.1 | 303 | Chr5: 16918651-16918953 | Arabidopsis thaliana |
AT5G42320:CDS:11.1 | 75 | Chr5: 16919047-16919121 | Arabidopsis thaliana |
AT5G42320:CDS:10.1 | 73 | Chr5: 16919207-16919279 | Arabidopsis thaliana |
AT5G42320:CDS:9.1 | 140 | Chr5: 16919449-16919588 | Arabidopsis thaliana |
AT5G42320:CDS:8.1 | 126 | Chr5: 16919795-16919920 | Arabidopsis thaliana |
AT5G42320:CDS:7.1 | 56 | Chr5: 16920016-16920071 | Arabidopsis thaliana |
AT5G42320:CDS:6.1 | 70 | Chr5: 16920155-16920224 | Arabidopsis thaliana |
AT5G42320:CDS:5.1 | 138 | Chr5: 16920315-16920452 | Arabidopsis thaliana |
AT5G42320:CDS:4.1 | 111 | Chr5: 16920614-16920724 | Arabidopsis thaliana |
AT5G42320:CDS:2 | 58 | Chr5: 16920798-16920855 | Arabidopsis thaliana |
AT5G42320:CDS:1 | 143 | Chr5: 16921206-16921348 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42310:exon:4 | 445 | Chr5: 16918125-16918569 | Arabidopsis thaliana |
AT5G42320:exon:13 | 465 | Chr5: 16918489-16918953 | Arabidopsis thaliana |
AT5G42320:exon:2 | 40 | Chr5: 16921206-16921245 | Arabidopsis thaliana |
AT5G42320:exon:12 | 303 | Chr5: 16918651-16918953 | Arabidopsis thaliana |
AT5G42320:exon:11 | 75 | Chr5: 16919047-16919121 | Arabidopsis thaliana |
AT5G42320:exon:10 | 73 | Chr5: 16919207-16919279 | Arabidopsis thaliana |
AT5G42320:exon:9 | 140 | Chr5: 16919449-16919588 | Arabidopsis thaliana |
AT5G42320:exon:8 | 126 | Chr5: 16919795-16919920 | Arabidopsis thaliana |
AT5G42320:exon:7 | 56 | Chr5: 16920016-16920071 | Arabidopsis thaliana |
AT5G42320:exon:6 | 70 | Chr5: 16920155-16920224 | Arabidopsis thaliana |
AT5G42320:exon:5 | 138 | Chr5: 16920315-16920452 | Arabidopsis thaliana |
AT5G42320:exon:4 | 111 | Chr5: 16920614-16920724 | Arabidopsis thaliana |
AT5G42320:exon:3 | 58 | Chr5: 16920798-16920855 | Arabidopsis thaliana |
AT5G42320:exon:1 | 391 | Chr5: 16921206-16921596 | Arabidopsis thaliana |
AT5G06295:exon:1 | 395 | Chr5: 16920835-16921229 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42320:five_prime_UTR:3 | 10 | Chr5: 16920846-16920855 | Arabidopsis thaliana |
AT5G42320:five_prime_UTR:2 | 40 | Chr5: 16921206-16921245 | Arabidopsis thaliana |
AT5G42320:five_prime_UTR:1 | 248 | Chr5: 16921349-16921596 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G42310 | locus:2157607 | AT5G42310 | 2842 | Chr5: 16915728-16918569 | A. thaliana | Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11) | Encodes a member of the Arabidopsis PPR family, expressed in the chloroplast, that acts as a regulator of chloroplast protein synthesis, interacts with the petB-petD intergenic region, and is required for the generation of petB and petD monocistronic RNAs. | Pentatricopeptide repeat (PPR-like) superfamily protein | CRP1 | |
AT5G06295 | AT5G06295 | 395 | Chr5: 16920835-16921229 | A. thaliana | Natural antisense transcript overlaps with AT5G42320;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G42310.1 | 2593 | Chr5: 16915728-16918569 |
AT5G42320.1 | 1352 | Chr5: 16918489-16921245 |
AT5G42320.2 | 1541 | Chr5: 16918651-16921596 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42310:three_prime_UTR:1 | 331 | Chr5: 16918239-16918569 | Arabidopsis thaliana |
AT5G42320:three_prime_UTR:1 | 162 | Chr5: 16918489-16918650 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE61080 | 602 | Chr5: 16921584-16922185 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE61080:transposon_fragment:1 | 602 | Chr5: 16921584-16922185 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1R7T3D6_ARATH F4K1I4_ARATH | similarity | Belongs to the peptidase M14 family. |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
zinc ion binding | ECO |
metallocarboxypeptidase activity | ECO |
biological process | |
proteolysis | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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