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Gene : AT5G42310 A. thaliana

DB identifier  ? AT5G42310 Secondary Identifier  ? locus:2157607
Brief Description  Pentatricopeptide repeat (PPR-like) superfamily protein
TAIR Computational Description  Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes a member of the Arabidopsis PPR family, expressed in the chloroplast, that acts as a regulator of chloroplast protein synthesis, interacts with the petB-petD intergenic region, and is required for the generation of petB and petD monocistronic RNAs.
TAIR Short Description  Pentatricopeptide repeat (PPR-like) superfamily protein
TAIR Aliases  CRP1

0 Gene Rifs

1 Organism

10 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2842  
Location: Chr5:16915728-16918569

Gene models - AT5G42310 AT5G42310

? Gene models

Transcripts: 1  Exons: 4  Introns: 3 

Overlapping Features

? Genome features that overlap coordinates of this Gene

5 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PP413_ARATH function Required for chloroplast protein synthesis and accumulation of subunits of the thylakoid protein complexes. Activates psaC and petA translation by binding their 5'-UTRs. Required for the correct processing of petB and petD mRNAs. Interacts with the petB and petD intergenic region and is required for the generation of petB and petD monocistronic RNAs.
PP413_ARATH similarity Belongs to the PPR family. P subfamily.

1 Proteins

Function

Gene Ontology

cellular component
chloroplast nucleoid  ? ECO  
chloroplast thylakoid  ? ECO  
chloroplast stroma  ? ECO  
thylakoid membrane  ? ECO  
chloroplast  ? ECO  
molecular function
mRNA binding  ? ECO  
single-stranded RNA binding  ? ECO  
biological process
chloroplast organization  ? ECO  
chloroplast mRNA processing  ? ECO  
regulation of translation  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets