External Links
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27830:CDS:1 | 26 | Chr5: 9861203-9861228 | Arabidopsis thaliana |
AT5G27830:CDS:2 | 99 | Chr5: 9861327-9861425 | Arabidopsis thaliana |
AT5G27830:CDS:5 | 385 | Chr5: 9861724-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:11 | 136 | Chr5: 9862607-9862742 | Arabidopsis thaliana |
AT5G27830:CDS:6 | 381 | Chr5: 9861728-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10.1 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:12 | 127 | Chr5: 9862616-9862742 | Arabidopsis thaliana |
AT5G27830:CDS:3 | 82 | Chr5: 9861344-9861425 | Arabidopsis thaliana |
AT5G27830:CDS:8 | 371 | Chr5: 9861738-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10.2 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:12.1 | 127 | Chr5: 9862616-9862742 | Arabidopsis thaliana |
AT5G27830:CDS:4 | 74 | Chr5: 9861352-9861425 | Arabidopsis thaliana |
AT5G27830:CDS:5.1 | 385 | Chr5: 9861724-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10.3 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:12.2 | 127 | Chr5: 9862616-9862742 | Arabidopsis thaliana |
AT5G27830:CDS:3.1 | 82 | Chr5: 9861344-9861425 | Arabidopsis thaliana |
AT5G27830:CDS:7 | 93 | Chr5: 9861738-9861830 | Arabidopsis thaliana |
AT5G27830:CDS:9 | 191 | Chr5: 9861918-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10.4 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:12.3 | 127 | Chr5: 9862616-9862742 | Arabidopsis thaliana |
AT5G27830:CDS:3.2 | 82 | Chr5: 9861344-9861425 | Arabidopsis thaliana |
AT5G27830:CDS:8.1 | 371 | Chr5: 9861738-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10.5 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:11.1 | 136 | Chr5: 9862607-9862742 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27830:exon:1 | 53 | Chr5: 9861176-9861228 | Arabidopsis thaliana |
AT5G27830:exon:6 | 99 | Chr5: 9861327-9861425 | Arabidopsis thaliana |
AT5G27830:exon:12 | 216 | Chr5: 9862607-9862822 | Arabidopsis thaliana |
AT5G27830:exon:3 | 877 | Chr5: 9861232-9862108 | Arabidopsis thaliana |
AT5G27830:exon:2 | 194 | Chr5: 9861232-9861425 | Arabidopsis thaliana |
AT5G27830:exon:15 | 322 | Chr5: 9862616-9862937 | Arabidopsis thaliana |
AT5G27830:exon:4 | 144 | Chr5: 9861282-9861425 | Arabidopsis thaliana |
AT5G27830:exon:7 | 385 | Chr5: 9861724-9862108 | Arabidopsis thaliana |
AT5G27830:exon:16 | 323 | Chr5: 9862616-9862938 | Arabidopsis thaliana |
AT5G27830:exon:8 | 93 | Chr5: 9861738-9861830 | Arabidopsis thaliana |
AT5G27830:exon:10 | 191 | Chr5: 9861918-9862108 | Arabidopsis thaliana |
AT5G27830:exon:14 | 281 | Chr5: 9862616-9862896 | Arabidopsis thaliana |
AT5G27830:exon:5 | 137 | Chr5: 9861289-9861425 | Arabidopsis thaliana |
AT5G27830:exon:9 | 371 | Chr5: 9861738-9862108 | Arabidopsis thaliana |
AT5G27830:exon:11 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:exon:13 | 291 | Chr5: 9862607-9862897 | Arabidopsis thaliana |
AT5G27840:exon:10 | 412 | Chr5: 9862923-9863334 | Arabidopsis thaliana |
AT5G27840:exon:9 | 584 | Chr5: 9862923-9863506 | Arabidopsis thaliana |
AT5G27840:exon:8 | 411 | Chr5: 9862924-9863334 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27830:five_prime_UTR:1 | 27 | Chr5: 9861176-9861202 | Arabidopsis thaliana |
AT5G27830:five_prime_UTR:3 | 496 | Chr5: 9861232-9861727 | Arabidopsis thaliana |
AT5G27830:five_prime_UTR:2 | 112 | Chr5: 9861232-9861343 | Arabidopsis thaliana |
AT5G27830:five_prime_UTR:4 | 70 | Chr5: 9861282-9861351 | Arabidopsis thaliana |
AT5G27830:five_prime_UTR:5 | 55 | Chr5: 9861289-9861343 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G27840 | locus:2180330 | TOPP8 | 2250 | Chr5: 9862923-9865172 | A. thaliana | Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11) | Encodes a Type One Protein Phosphatase that acts as a nucleocytoplasmic negative regulator of tip growth. Mutants affect pollen germination, pollen tube growth, and root hair growth. It acts genetically downstream of ANX1 (AT3G04690) and ANX2 (AT5G28680) and is functionally redundant with ATUNIS1/TOPP9 (AT3G05580). | Calcineurin-like metallo-phosphoesterase superfamily protein | AUN2, TOPP8 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G27830.4 | 1076 | Chr5: 9861176-9862822 |
AT5G27830.6 | 1522 | Chr5: 9861232-9862937 |
AT5G27830.1 | 1210 | Chr5: 9861232-9862937 |
AT5G27830.3 | 1175 | Chr5: 9861282-9862938 |
AT5G27830.2 | 1025 | Chr5: 9861289-9862896 |
AT5G27830.5 | 1122 | Chr5: 9861289-9862897 |
AT5G27840.4 | 1834 | Chr5: 9862923-9865123 |
AT5G27840.1 | 1689 | Chr5: 9862923-9865172 |
AT5G27840.3 | 1861 | Chr5: 9862923-9865172 |
AT5G27840.2 | 1648 | Chr5: 9862924-9865038 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27830:three_prime_UTR:1 | 80 | Chr5: 9862743-9862822 | Arabidopsis thaliana |
AT5G27830:three_prime_UTR:4 | 195 | Chr5: 9862743-9862937 | Arabidopsis thaliana |
AT5G27830:three_prime_UTR:5 | 196 | Chr5: 9862743-9862938 | Arabidopsis thaliana |
AT5G27830:three_prime_UTR:2 | 154 | Chr5: 9862743-9862896 | Arabidopsis thaliana |
AT5G27830:three_prime_UTR:3 | 155 | Chr5: 9862743-9862897 | Arabidopsis thaliana |
AT5G27840:three_prime_UTR:5 | 412 | Chr5: 9862923-9863334 | Arabidopsis thaliana |
AT5G27840:three_prime_UTR:6 | 388 | Chr5: 9862923-9863310 | Arabidopsis thaliana |
AT5G27840:three_prime_UTR:4 | 542 | Chr5: 9862923-9863464 | Arabidopsis thaliana |
AT5G27840:three_prime_UTR:3 | 411 | Chr5: 9862924-9863334 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
FBP1_ARATH-2 FBP1_ARATH | function | Folic acid-binding protein involved in salicylic acid- (SA-) induced folate accumulation by triggering uptake and accumulation of folic acid in cells (PubMed:29231735). May be implicated in the transport of the folates from the site of production (leaves) to the site of storage (fruits and seeds) and utilization (roots) (Probable). |
FBP1_ARATH-2 FBP1_ARATH | similarity | Belongs to the folate receptor family. |
FBP1_ARATH-2 FBP1_ARATH | tissue specificity | Expressed in leaves. |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
folic acid binding | ECO |
folic acid transmembrane transporter activity | ECO |
biological process | |
folic acid transport | ECO |
response to salicylic acid | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...