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Gene : AT5G19350 A. thaliana

DB identifier  ? AT5G19350 Secondary Identifier  ? locus:2150215
Brief Description  RNA-binding (RRM/RBD/RNP motifs) family protein
TAIR Computational Description  RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
TAIR Curator Summary  RBP45d is a component of the U1 small nuclear ribonucleoprotein and regulates alternative splicing.
TAIR Short Description  RNA-binding (RRM/RBD/RNP motifs) family protein
TAIR Aliases  RBP45d

1 Gene Rifs

1 Organism

10 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2707  
Location: Chr5:6518777-6521483

Gene models - AT5G19350 AT5G19350

? Gene models

Transcripts: 2  Exons: 16  Introns: 14 

Overlapping Features

? Genome features that overlap coordinates of this Gene

13 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
R47BP_ARATH R47BP_ARATH-2 function Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation.
R47BP_ARATH R47BP_ARATH-2 similarity Belongs to the polyadenylate-binding RBP47 family.

2 Proteins

Function

Gene Ontology

cellular component
U1 snRNP  ? ECO  
cytoplasmic stress granule  ? ECO  
nucleus  ? ECO  
molecular function
mRNA binding  ? ECO  
poly(A) binding  ? ECO  
biological process
cellular response to heat  ? ECO  
mRNA splicing, via spliceosome  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets