External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 18, Exons: 15, Five Prime UTRs: 6, Genes: 3, mRNAs: 5, Three Prime UTRs: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G02140:CDS:4 | 157 | Chr5: 424281-424437 | Arabidopsis thaliana |
AT5G02150:CDS:7 | 370 | Chr5: 424481-424850 | Arabidopsis thaliana |
AT5G02150:CDS:6 | 103 | Chr5: 424978-425080 | Arabidopsis thaliana |
AT5G02150:CDS:5 | 222 | Chr5: 425193-425414 | Arabidopsis thaliana |
AT5G02150:CDS:4 | 51 | Chr5: 425508-425558 | Arabidopsis thaliana |
AT5G02150:CDS:2 | 143 | Chr5: 425643-425785 | Arabidopsis thaliana |
AT5G02150:CDS:1 | 86 | Chr5: 425983-426068 | Arabidopsis thaliana |
AT5G02150:CDS:7.1 | 370 | Chr5: 424481-424850 | Arabidopsis thaliana |
AT5G02150:CDS:6.1 | 103 | Chr5: 424978-425080 | Arabidopsis thaliana |
AT5G02150:CDS:5.1 | 222 | Chr5: 425193-425414 | Arabidopsis thaliana |
AT5G02150:CDS:4.1 | 51 | Chr5: 425508-425558 | Arabidopsis thaliana |
AT5G02150:CDS:3 | 112 | Chr5: 425643-425754 | Arabidopsis thaliana |
AT5G02150:CDS:7.2 | 370 | Chr5: 424481-424850 | Arabidopsis thaliana |
AT5G02150:CDS:6.2 | 103 | Chr5: 424978-425080 | Arabidopsis thaliana |
AT5G02150:CDS:5.2 | 222 | Chr5: 425193-425414 | Arabidopsis thaliana |
AT5G02150:CDS:4.2 | 51 | Chr5: 425508-425558 | Arabidopsis thaliana |
AT5G02150:CDS:2.1 | 143 | Chr5: 425643-425785 | Arabidopsis thaliana |
AT5G02150:CDS:1.1 | 86 | Chr5: 425983-426068 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G02140:exon:5 | 157 | Chr5: 424281-424437 | Arabidopsis thaliana |
AT5G02150:exon:12 | 560 | Chr5: 424291-424850 | Arabidopsis thaliana |
AT5G02150:exon:2 | 134 | Chr5: 425983-426116 | Arabidopsis thaliana |
AT5G02150:exon:11 | 558 | Chr5: 424293-424850 | Arabidopsis thaliana |
AT5G02150:exon:5 | 147 | Chr5: 425643-425789 | Arabidopsis thaliana |
AT5G02150:exon:4 | 75 | Chr5: 425983-426057 | Arabidopsis thaliana |
AT5G02150:exon:10 | 370 | Chr5: 424481-424850 | Arabidopsis thaliana |
AT5G02150:exon:9 | 103 | Chr5: 424978-425080 | Arabidopsis thaliana |
AT5G02150:exon:8 | 222 | Chr5: 425193-425414 | Arabidopsis thaliana |
AT5G02150:exon:7 | 51 | Chr5: 425508-425558 | Arabidopsis thaliana |
AT5G02150:exon:6 | 143 | Chr5: 425643-425785 | Arabidopsis thaliana |
AT5G02150:exon:3 | 112 | Chr5: 425983-426094 | Arabidopsis thaliana |
AT5G02150:exon:1 | 166 | Chr5: 426213-426378 | Arabidopsis thaliana |
AT5G00820:exon:1 | 279 | Chr5: 424426-424704 | Arabidopsis thaliana |
AT5G02160:exon:1 | 414 | Chr5: 426226-426639 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G02150:five_prime_UTR:2 | 48 | Chr5: 426069-426116 | Arabidopsis thaliana |
AT5G02150:five_prime_UTR:5 | 35 | Chr5: 425755-425789 | Arabidopsis thaliana |
AT5G02150:five_prime_UTR:4 | 75 | Chr5: 425983-426057 | Arabidopsis thaliana |
AT5G02150:five_prime_UTR:3 | 26 | Chr5: 426069-426094 | Arabidopsis thaliana |
AT5G02150:five_prime_UTR:1 | 166 | Chr5: 426213-426378 | Arabidopsis thaliana |
AT5G02160:five_prime_UTR:1 | 166 | Chr5: 426226-426391 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G02140 | locus:2185218 | AT5G02140 | 1236 | Chr5: 423202-424437 | A. thaliana | Pathogenesis-related thaumatin superfamily protein;(source:Araport11) | Pollen expressed thaumatin like protein. | Pathogenesis-related thaumatin superfamily protein | GCTLP1 | |
AT5G00820 | AT5G00820 | 279 | Chr5: 424426-424704 | A. thaliana | Natural antisense transcript overlaps with AT5G02150;(source:Araport11) | NULL | ||||
AT5G02160 | locus:2185128 | AT5G02160 | 1236 | Chr5: 426226-427461 | A. thaliana | transmembrane protein;(source:Araport11) | Zinc-finger domain containing protein involved in abiotic stress response. Possesses an N-terminal transit peptide followed by a hydrophobic domain and a zinc-finger domain. Despite the presence of a zinc-finger domain (C4-type) with two CXXCXGXG conserved repeats, characteristic of DNAJ protein, the conserved J domain is absent in FIP. Interacts with FtsH5. Gene expression levels are reduced and negatively regulates stress response genes during stress conditions. | NULL | FIP |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G02140.1 | 973 | Chr5: 423296-424437 |
AT5G02150.1 | 1213 | Chr5: 424291-426116 |
AT5G02150.2 | 1156 | Chr5: 424293-426057 |
AT5G02150.3 | 1167 | Chr5: 424481-426378 |
AT5G02160.1 | 993 | Chr5: 426226-427461 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G02150:three_prime_UTR:2 | 190 | Chr5: 424291-424480 | Arabidopsis thaliana |
AT5G02150:three_prime_UTR:1 | 188 | Chr5: 424293-424480 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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