External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Transcript | Exons | Introns | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
AT4G08580.1
AT4G08580.1
1680 |
|
|
||||||||||
AT4G08580.2
AT4G08580.2
2253 |
|
|
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 4, Exons: 7, Five Prime UTRs: 3, Gene: 1, mRNAs: 8, Three Prime UTRs: 6, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08580:CDS:1 | 1196 | Chr4: 5462190-5463385 | Arabidopsis thaliana |
AT4G08580:CDS:2 | 112 | Chr4: 5463607-5463718 | Arabidopsis thaliana |
AT4G08580:CDS:1.1 | 1196 | Chr4: 5462190-5463385 | Arabidopsis thaliana |
AT4G08580:CDS:2.1 | 112 | Chr4: 5463607-5463718 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08580:exon:1 | 136 | Chr4: 5461398-5461533 | Arabidopsis thaliana |
AT4G08580:exon:3 | 1243 | Chr4: 5462143-5463385 | Arabidopsis thaliana |
AT4G08580:exon:2 | 1952 | Chr4: 5461434-5463385 | Arabidopsis thaliana |
AT4G08580:exon:4 | 301 | Chr4: 5463607-5463907 | Arabidopsis thaliana |
AT4G08590:exon:15 | 435 | Chr4: 5463794-5464228 | Arabidopsis thaliana |
AT4G08590:exon:14 | 540 | Chr4: 5463885-5464424 | Arabidopsis thaliana |
AT4G08590:exon:13 | 329 | Chr4: 5463900-5464228 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08580:five_prime_UTR:1 | 136 | Chr4: 5461398-5461533 | Arabidopsis thaliana |
AT4G08580:five_prime_UTR:3 | 47 | Chr4: 5462143-5462189 | Arabidopsis thaliana |
AT4G08580:five_prime_UTR:2 | 756 | Chr4: 5461434-5462189 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G08590 | locus:2138591 | ORTHL | ORTHRUS-like | 2954 | Chr4: 5463794-5466747 | A. thaliana | ORTHRUS-like protein;(source:Araport11) | NULL | ORTHRUS-like | ORL1, ORTHL, VIM6 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G08580.1 | 1680 | Chr4: 5461398-5463907 |
AT4G08580.2 | 2253 | Chr4: 5461434-5463907 |
AT4G08590.4 | 1864 | Chr4: 5463794-5466731 |
AT4G08590.1 | 1801 | Chr4: 5463794-5466747 |
AT4G08590.3 | 1866 | Chr4: 5463794-5466747 |
AT4G08590.5 | 1845 | Chr4: 5463885-5466710 |
AT4G08590.6 | 1766 | Chr4: 5463885-5466710 |
AT4G08590.2 | 1615 | Chr4: 5463900-5466670 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08580:three_prime_UTR:1 | 189 | Chr4: 5463719-5463907 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:8 | 291 | Chr4: 5463794-5464084 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:7 | 435 | Chr4: 5463794-5464228 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:5 | 540 | Chr4: 5463885-5464424 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:6 | 413 | Chr4: 5463885-5464297 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:4 | 185 | Chr4: 5463900-5464084 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE22885 | 494 | Chr4: 5462624-5463117 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE22885:transposon_fragment:1 | 494 | Chr4: 5462624-5463117 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...