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Gene : APD1 A. thaliana

DB identifier  ? AT2G38185 Secondary Identifier  ? locus:505006305
Name  ? ABERRANT POLLEN DEVELOPMENT 1 Brief Description  RING/U-box superfamily protein
TAIR Computational Description  RING/U-box superfamily protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  RING/U-box superfamily protein
TAIR Aliases  APD1

2 Gene Rifs

1 Organism

5 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3244  
Location: Chr2:15999926-16003169

Gene models - APD1 AT2G38185

? Gene models

Transcripts: 4  Exons: 42  Introns: 38 

Overlapping Features

? Genome features that overlap coordinates of this Gene

20 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
APD1_ARATH-2 APD1_ARATH-3 APD1_ARATH developmental stage In young seedlings, expressed in the shoot apical meristem (SAM) and in root tips (PubMed:22897245). In inflorescence, highly observed in the pistil and in seeds, but weakly present during male gametogenesis (PubMed:22897245). Observed at very weak levels from the late bicellular pollen stage to the mature pollen stage (PubMed:22897245). Detected in the germinating pollen tubes (PubMed:22897245).
APD1_ARATH-2 APD1_ARATH-3 APD1_ARATH function Involved in pollen mitosis II (PMII) regulation during male gametogenesis.
APD1_ARATH-2 APD1_ARATH-3 APD1_ARATH pathway Protein modification; protein ubiquitination.
APD1_ARATH-2 APD1_ARATH-3 APD1_ARATH subcellular location Associated with intracellular membranes and in the tonoplast and endosomes in the germinating pollen tubes.
APD1_ARATH-2 APD1_ARATH-3 APD1_ARATH tissue specificity Expressed in the shoot apical meristems (SAM), root tips and inflorescences, and, at low levels, in floral buds and pollen.

4 Proteins

Function

Gene Ontology

cellular component
plant-type vacuole membrane  ? ECO  
endosome  ? ECO  
molecular function
ubiquitin protein ligase activity  ? ECO  
metal ion binding  ? ECO  
biological process
pollen development  ? ECO  
protein ubiquitination  ? ECO  
mitotic cell cycle  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets