External Links
- Aracyc
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- Plant Proteome Database
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- GeneVisible
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 61, Exons: 23, Five Prime UTRs: 10, mRNAs: 7, Three Prime UTRs: 7, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G58180:CDS:13 | 189 | Chr1: 21538010-21538198 | Arabidopsis thaliana |
AT1G58180:CDS:10 | 103 | Chr1: 21538299-21538401 | Arabidopsis thaliana |
AT1G58180:CDS:9 | 89 | Chr1: 21538483-21538571 | Arabidopsis thaliana |
AT1G58180:CDS:8 | 54 | Chr1: 21538648-21538701 | Arabidopsis thaliana |
AT1G58180:CDS:7 | 114 | Chr1: 21538791-21538904 | Arabidopsis thaliana |
AT1G58180:CDS:6 | 49 | Chr1: 21539005-21539053 | Arabidopsis thaliana |
AT1G58180:CDS:4 | 132 | Chr1: 21539169-21539300 | Arabidopsis thaliana |
AT1G58180:CDS:3 | 65 | Chr1: 21539394-21539458 | Arabidopsis thaliana |
AT1G58180:CDS:2 | 62 | Chr1: 21539554-21539615 | Arabidopsis thaliana |
AT1G58180:CDS:1 | 16 | Chr1: 21539696-21539711 | Arabidopsis thaliana |
AT1G58180:CDS:11 | 259 | Chr1: 21538143-21538401 | Arabidopsis thaliana |
AT1G58180:CDS:9.1 | 89 | Chr1: 21538483-21538571 | Arabidopsis thaliana |
AT1G58180:CDS:8.1 | 54 | Chr1: 21538648-21538701 | Arabidopsis thaliana |
AT1G58180:CDS:7.1 | 114 | Chr1: 21538791-21538904 | Arabidopsis thaliana |
AT1G58180:CDS:6.1 | 49 | Chr1: 21539005-21539053 | Arabidopsis thaliana |
AT1G58180:CDS:4.1 | 132 | Chr1: 21539169-21539300 | Arabidopsis thaliana |
AT1G58180:CDS:3.1 | 65 | Chr1: 21539394-21539458 | Arabidopsis thaliana |
AT1G58180:CDS:2.1 | 62 | Chr1: 21539554-21539615 | Arabidopsis thaliana |
AT1G58180:CDS:1.1 | 16 | Chr1: 21539696-21539711 | Arabidopsis thaliana |
AT1G58180:CDS:13.1 | 189 | Chr1: 21538010-21538198 | Arabidopsis thaliana |
AT1G58180:CDS:10.1 | 103 | Chr1: 21538299-21538401 | Arabidopsis thaliana |
AT1G58180:CDS:9.2 | 89 | Chr1: 21538483-21538571 | Arabidopsis thaliana |
AT1G58180:CDS:8.2 | 54 | Chr1: 21538648-21538701 | Arabidopsis thaliana |
AT1G58180:CDS:7.2 | 114 | Chr1: 21538791-21538904 | Arabidopsis thaliana |
AT1G58180:CDS:6.2 | 49 | Chr1: 21539005-21539053 | Arabidopsis thaliana |
AT1G58180:CDS:5 | 122 | Chr1: 21539169-21539290 | Arabidopsis thaliana |
AT1G58180:CDS:13.2 | 189 | Chr1: 21538010-21538198 | Arabidopsis thaliana |
AT1G58180:CDS:10.2 | 103 | Chr1: 21538299-21538401 | Arabidopsis thaliana |
AT1G58180:CDS:9.3 | 89 | Chr1: 21538483-21538571 | Arabidopsis thaliana |
AT1G58180:CDS:8.3 | 54 | Chr1: 21538648-21538701 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G58180:exon:23 | 622 | Chr1: 21537577-21538198 | Arabidopsis thaliana |
AT1G58180:exon:22 | 825 | Chr1: 21537577-21538401 | Arabidopsis thaliana |
AT1G58180:exon:1 | 343 | Chr1: 21539696-21540038 | Arabidopsis thaliana |
AT1G58180:exon:21 | 504 | Chr1: 21537695-21538198 | Arabidopsis thaliana |
AT1G58180:exon:9 | 290 | Chr1: 21539169-21539458 | Arabidopsis thaliana |
AT1G58180:exon:3 | 220 | Chr1: 21539696-21539915 | Arabidopsis thaliana |
AT1G58180:exon:20 | 50 | Chr1: 21537770-21537819 | Arabidopsis thaliana |
AT1G58180:exon:17 | 284 | Chr1: 21537915-21538198 | Arabidopsis thaliana |
AT1G58180:exon:4 | 219 | Chr1: 21539696-21539914 | Arabidopsis thaliana |
AT1G58180:exon:7 | 136 | Chr1: 21539394-21539529 | Arabidopsis thaliana |
AT1G58180:exon:19 | 396 | Chr1: 21537803-21538198 | Arabidopsis thaliana |
AT1G58180:exon:5 | 361 | Chr1: 21539554-21539914 | Arabidopsis thaliana |
AT1G58180:exon:18 | 178 | Chr1: 21537852-21538029 | Arabidopsis thaliana |
AT1G58180:exon:16 | 67 | Chr1: 21538132-21538198 | Arabidopsis thaliana |
AT1G58180:exon:15 | 103 | Chr1: 21538299-21538401 | Arabidopsis thaliana |
AT1G58180:exon:14 | 89 | Chr1: 21538483-21538571 | Arabidopsis thaliana |
AT1G58180:exon:13 | 54 | Chr1: 21538648-21538701 | Arabidopsis thaliana |
AT1G58180:exon:12 | 114 | Chr1: 21538791-21538904 | Arabidopsis thaliana |
AT1G58180:exon:11 | 49 | Chr1: 21539005-21539053 | Arabidopsis thaliana |
AT1G58180:exon:10 | 132 | Chr1: 21539169-21539300 | Arabidopsis thaliana |
AT1G58180:exon:8 | 65 | Chr1: 21539394-21539458 | Arabidopsis thaliana |
AT1G58180:exon:6 | 62 | Chr1: 21539554-21539615 | Arabidopsis thaliana |
AT1G58180:exon:2 | 281 | Chr1: 21539696-21539976 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G58180:five_prime_UTR:1 | 327 | Chr1: 21539712-21540038 | Arabidopsis thaliana |
AT1G58180:five_prime_UTR:9 | 168 | Chr1: 21539291-21539458 | Arabidopsis thaliana |
AT1G58180:five_prime_UTR:6 | 62 | Chr1: 21539554-21539615 | Arabidopsis thaliana |
AT1G58180:five_prime_UTR:4 | 220 | Chr1: 21539696-21539915 | Arabidopsis thaliana |
AT1G58180:five_prime_UTR:3 | 203 | Chr1: 21539712-21539914 | Arabidopsis thaliana |
AT1G58180:five_prime_UTR:7 | 136 | Chr1: 21539394-21539529 | Arabidopsis thaliana |
AT1G58180:five_prime_UTR:10 | 10 | Chr1: 21539291-21539300 | Arabidopsis thaliana |
AT1G58180:five_prime_UTR:8 | 65 | Chr1: 21539394-21539458 | Arabidopsis thaliana |
AT1G58180:five_prime_UTR:5 | 361 | Chr1: 21539554-21539914 | Arabidopsis thaliana |
AT1G58180:five_prime_UTR:2 | 265 | Chr1: 21539712-21539976 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G58180.2 | 1633 | Chr1: 21537577-21540038 |
AT1G58180.5 | 1733 | Chr1: 21537577-21540038 |
AT1G58180.3 | 1485 | Chr1: 21537695-21539915 |
AT1G58180.4 | 1221 | Chr1: 21537770-21539914 |
AT1G58180.7 | 1073 | Chr1: 21537803-21539529 |
AT1G58180.6 | 1363 | Chr1: 21537803-21539914 |
AT1G58180.1 | 1194 | Chr1: 21537852-21539976 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G58180:three_prime_UTR:7 | 433 | Chr1: 21537577-21538009 | Arabidopsis thaliana |
AT1G58180:three_prime_UTR:6 | 566 | Chr1: 21537577-21538142 | Arabidopsis thaliana |
AT1G58180:three_prime_UTR:5 | 315 | Chr1: 21537695-21538009 | Arabidopsis thaliana |
AT1G58180:three_prime_UTR:4 | 50 | Chr1: 21537770-21537819 | Arabidopsis thaliana |
AT1G58180:three_prime_UTR:1 | 95 | Chr1: 21537915-21538009 | Arabidopsis thaliana |
AT1G58180:three_prime_UTR:3 | 207 | Chr1: 21537803-21538009 | Arabidopsis thaliana |
AT1G58180:three_prime_UTR:2 | 158 | Chr1: 21537852-21538009 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE71080 | 741 | Chr1: 21540010-21540750 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE71080:transposon_fragment:2 | 205 | Chr1: 21540010-21540214 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
BCA6_ARATH-3 A0A1P8ANM5_ARATH BCA6_ARATH-2 BCA6_ARATH | function | Reversible hydration of carbon dioxide. |
BCA6_ARATH-3 A0A1P8ANM5_ARATH BCA6_ARATH-2 BCA6_ARATH | similarity | Belongs to the beta-class carbonic anhydrase family. |
BCA6_ARATH-3 BCA6_ARATH-2 BCA6_ARATH | tissue specificity | Strongly expressed in aerial tissues including leaves, stems, flowers and siliques, and, to a lower extent, in roots. Accumulates in guard cells. |
Function
Gene Ontology
cellular component | |
---|---|
mitochondrion | ECO |
molecular function | |
zinc ion binding | ECO |
carbonate dehydratase activity | ECO |
biological process | |
carbon utilization | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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