External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 17, Exons: 12, Five Prime UTRs: 7, mRNAs: 5, Three Prime UTRs: 4, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G23060:CDS:5 | 327 | Chr1: 8170946-8171272 | Arabidopsis thaliana |
AT1G23060:CDS:4 | 169 | Chr1: 8171364-8171532 | Arabidopsis thaliana |
AT1G23060:CDS:2 | 566 | Chr1: 8171619-8172184 | Arabidopsis thaliana |
AT1G23060:CDS:1 | 42 | Chr1: 8172698-8172739 | Arabidopsis thaliana |
AT1G23060:CDS:5.1 | 327 | Chr1: 8170946-8171272 | Arabidopsis thaliana |
AT1G23060:CDS:4.1 | 169 | Chr1: 8171364-8171532 | Arabidopsis thaliana |
AT1G23060:CDS:3 | 425 | Chr1: 8171619-8172043 | Arabidopsis thaliana |
AT1G23060:CDS:5.2 | 327 | Chr1: 8170946-8171272 | Arabidopsis thaliana |
AT1G23060:CDS:4.2 | 169 | Chr1: 8171364-8171532 | Arabidopsis thaliana |
AT1G23060:CDS:2.1 | 566 | Chr1: 8171619-8172184 | Arabidopsis thaliana |
AT1G23060:CDS:1.1 | 42 | Chr1: 8172698-8172739 | Arabidopsis thaliana |
AT1G23060:CDS:5.3 | 327 | Chr1: 8170946-8171272 | Arabidopsis thaliana |
AT1G23060:CDS:4.3 | 169 | Chr1: 8171364-8171532 | Arabidopsis thaliana |
AT1G23060:CDS:3.1 | 425 | Chr1: 8171619-8172043 | Arabidopsis thaliana |
AT1G23060:CDS:5.4 | 327 | Chr1: 8170946-8171272 | Arabidopsis thaliana |
AT1G23060:CDS:4.4 | 169 | Chr1: 8171364-8171532 | Arabidopsis thaliana |
AT1G23060:CDS:3.2 | 425 | Chr1: 8171619-8172043 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G23060:exon:12 | 580 | Chr1: 8170693-8171272 | Arabidopsis thaliana |
AT1G23060:exon:3 | 50 | Chr1: 8172698-8172747 | Arabidopsis thaliana |
AT1G23060:exon:1 | 242 | Chr1: 8172844-8173085 | Arabidopsis thaliana |
AT1G23060:exon:4 | 302 | Chr1: 8172395-8172696 | Arabidopsis thaliana |
AT1G23060:exon:11 | 554 | Chr1: 8170719-8171272 | Arabidopsis thaliana |
AT1G23060:exon:2 | 120 | Chr1: 8172698-8172817 | Arabidopsis thaliana |
AT1G23060:exon:10 | 544 | Chr1: 8170729-8171272 | Arabidopsis thaliana |
AT1G23060:exon:6 | 903 | Chr1: 8171619-8172521 | Arabidopsis thaliana |
AT1G23060:exon:9 | 531 | Chr1: 8170742-8171272 | Arabidopsis thaliana |
AT1G23060:exon:8 | 169 | Chr1: 8171364-8171532 | Arabidopsis thaliana |
AT1G23060:exon:7 | 566 | Chr1: 8171619-8172184 | Arabidopsis thaliana |
AT1G23060:exon:5 | 149 | Chr1: 8172336-8172484 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G23060:five_prime_UTR:3 | 8 | Chr1: 8172740-8172747 | Arabidopsis thaliana |
AT1G23060:five_prime_UTR:1 | 242 | Chr1: 8172844-8173085 | Arabidopsis thaliana |
AT1G23060:five_prime_UTR:4 | 302 | Chr1: 8172395-8172696 | Arabidopsis thaliana |
AT1G23060:five_prime_UTR:2 | 78 | Chr1: 8172740-8172817 | Arabidopsis thaliana |
AT1G23060:five_prime_UTR:6 | 478 | Chr1: 8172044-8172521 | Arabidopsis thaliana |
AT1G23060:five_prime_UTR:7 | 141 | Chr1: 8172044-8172184 | Arabidopsis thaliana |
AT1G23060:five_prime_UTR:5 | 149 | Chr1: 8172336-8172484 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G23060.1 | 1607 | Chr1: 8170693-8173085 |
AT1G23060.3 | 1591 | Chr1: 8170719-8172696 |
AT1G23060.4 | 1409 | Chr1: 8170719-8172817 |
AT1G23060.5 | 1616 | Chr1: 8170729-8172521 |
AT1G23060.2 | 1415 | Chr1: 8170742-8172484 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G23060:three_prime_UTR:4 | 253 | Chr1: 8170693-8170945 | Arabidopsis thaliana |
AT1G23060:three_prime_UTR:3 | 227 | Chr1: 8170719-8170945 | Arabidopsis thaliana |
AT1G23060:three_prime_UTR:2 | 217 | Chr1: 8170729-8170945 | Arabidopsis thaliana |
AT1G23060:three_prime_UTR:1 | 204 | Chr1: 8170742-8170945 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE26305 | 1225 | Chr1: 8169559-8170783 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE26305:transposon_fragment:1 | 1225 | Chr1: 8169559-8170783 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...