help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AT1G17600 A. thaliana

DB identifier  ? AT1G17600 Secondary Identifier  ? locus:2007863
Brief Description  Disease resistance protein (TIR-NBS-LRR class) family
TAIR Computational Description  Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
TAIR Curator Summary  SOC3 is a TIR-NB-leucine-rich repeat (TNL) protein.Mutants suppress loss of chs2 phenotype of auto-activation of immunity. When the TIR domain of SOC3 interacts with CHS2 the binding results in temperature activation of cell death, the suppressors inhibit this interaction.
TAIR Short Description  Disease resistance protein (TIR-NBS-LRR class) family
TAIR Aliases  SOC3

3 Gene Rifs

1 Organism

8 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 5179  
Location: Chr1:6052936-6058114 reverse strand

Gene models - AT1G17600 AT1G17600

? Gene models

Transcripts: 1  Exons: 5  Introns: 4 

Overlapping Features

? Genome features that overlap coordinates of this Gene

6 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

0 Upstream Intergenic Region

Proteins

Curated comments from UniProt

No comments found

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
membrane  ? ECO  
cytoplasm  ? ECO  
molecular function
ADP binding  ? ECO  
biological process
defense response  ? ECO  
regulation of innate immune response  ? ECO  
signal transduction  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets