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Gene : PKDM7D A. thaliana

DB identifier  ? AT1G08620 Secondary Identifier  ? locus:2025635
Brief Description  Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
TAIR Computational Description  Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
TAIR Curator Summary  Member of family of Jumonji C (JmjC)-containing demethylases, its catalytic domain exhibits both H3K4 and H3K9 demethylation activities. Together with MMD1 promotes in male meiocytes gene expression in an H3K9me3-dependent manner and thereby contributes to meiotic chromosome condensation.
TAIR Short Description  Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
TAIR Aliases  JMJ16, PKDM7D

0 Gene Rifs

1 Organism

14 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 7226  
Location: Chr1:2736656-2743881

Gene models - PKDM7D AT1G08620

? Gene models

Transcripts: 4  Exons: 50  Introns: 46 

Overlapping Features Displayer

23 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

0 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
JMJ16_ARATH developmental stage Fades out gradually during aging.
JMJ16_ARATH function Functions as a histone H3 'Lys-4' (H3K4me) demethylase involved in the negative regulation of gene expression (PubMed:30712008, PubMed:32572214). Active on H3K4me1, H3K4me2 and H3K4me3 (PubMed:30712008, PubMed:32572214). Not active on mono-, di- and trimethylated H3K9, H3K27 and H3K36 in somatic cells (PubMed:30712008, PubMed:32572214). However, also active on H3K9 when in complex with MMD1, a meiocyte-specific histone reader (PubMed:32572214). Together with MMD1, promotes gene expression in male meiocytes in an H3K9me3-dependent manner, and contributes to meiotic chromosome condensation by triggering some condensin promoters (e.g. CAP-D3 and CAP-H) (PubMed:32572214). Together with JMJ14 and JMJ17, required for plant growth and development (PubMed:31038749). Represses leaf senescence in an age-dependent manner by demethylating H3K4me3 activating histone marks at senescence-associated genes (SAGs) loci, including WRKY53 and SAG201, thus preventing their premature expression (PubMed:30712008).
JMJ16_ARATH similarity Belongs to the JARID1 histone demethylase family.
JMJ16_ARATH tissue specificity Confined to inflorescences.

2 Proteins

Function

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
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LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets