External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
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- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
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- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 25, Exons: 19, Five Prime UTRs: 9, mRNAs: 9, Three Prime UTRs: 7, Transposable Elements: 2, Transposon Fragments: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G06630:CDS:2 | 906 | Chr1: 2028071-2028976 | Arabidopsis thaliana |
AT1G06630:CDS:5 | 165 | Chr1: 2029050-2029214 | Arabidopsis thaliana |
AT1G06630:CDS:2.1 | 906 | Chr1: 2028071-2028976 | Arabidopsis thaliana |
AT1G06630:CDS:4 | 150 | Chr1: 2029050-2029199 | Arabidopsis thaliana |
AT1G06630:CDS:7 | 156 | Chr1: 2029287-2029442 | Arabidopsis thaliana |
AT1G06630:CDS:2.2 | 906 | Chr1: 2028071-2028976 | Arabidopsis thaliana |
AT1G06630:CDS:4.1 | 150 | Chr1: 2029050-2029199 | Arabidopsis thaliana |
AT1G06630:CDS:7.1 | 156 | Chr1: 2029287-2029442 | Arabidopsis thaliana |
AT1G06630:CDS:2.3 | 906 | Chr1: 2028071-2028976 | Arabidopsis thaliana |
AT1G06630:CDS:4.2 | 150 | Chr1: 2029050-2029199 | Arabidopsis thaliana |
AT1G06630:CDS:7.2 | 156 | Chr1: 2029287-2029442 | Arabidopsis thaliana |
AT1G06630:CDS:3 | 915 | Chr1: 2028071-2028985 | Arabidopsis thaliana |
AT1G06630:CDS:2.4 | 906 | Chr1: 2028071-2028976 | Arabidopsis thaliana |
AT1G06630:CDS:5.1 | 165 | Chr1: 2029050-2029214 | Arabidopsis thaliana |
AT1G06630:CDS:1 | 933 | Chr1: 2028044-2028976 | Arabidopsis thaliana |
AT1G06630:CDS:4.3 | 150 | Chr1: 2029050-2029199 | Arabidopsis thaliana |
AT1G06630:CDS:7.3 | 156 | Chr1: 2029287-2029442 | Arabidopsis thaliana |
AT1G06630:CDS:2.5 | 906 | Chr1: 2028071-2028976 | Arabidopsis thaliana |
AT1G06630:CDS:4.4 | 150 | Chr1: 2029050-2029199 | Arabidopsis thaliana |
AT1G06630:CDS:7.4 | 156 | Chr1: 2029287-2029442 | Arabidopsis thaliana |
AT1G06630:CDS:2.6 | 906 | Chr1: 2028071-2028976 | Arabidopsis thaliana |
AT1G06630:CDS:4.5 | 150 | Chr1: 2029050-2029199 | Arabidopsis thaliana |
AT1G06630:CDS:6 | 90 | Chr1: 2029287-2029376 | Arabidopsis thaliana |
AT1G06630:CDS:8 | 205 | Chr1: 2030003-2030207 | Arabidopsis thaliana |
AT1G06630:CDS:9 | 83 | Chr1: 2031091-2031173 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G06630:exon:13 | 602 | Chr1: 2029050-2029651 | Arabidopsis thaliana |
AT1G06630:exon:3 | 357 | Chr1: 2027606-2027962 | Arabidopsis thaliana |
AT1G06630:exon:1 | 200 | Chr1: 2027606-2027805 | Arabidopsis thaliana |
AT1G06630:exon:2 | 211 | Chr1: 2027606-2027816 | Arabidopsis thaliana |
AT1G06630:exon:17 | 365 | Chr1: 2029287-2029651 | Arabidopsis thaliana |
AT1G06630:exon:4 | 156 | Chr1: 2027661-2027816 | Arabidopsis thaliana |
AT1G06630:exon:10 | 1147 | Chr1: 2028053-2029199 | Arabidopsis thaliana |
AT1G06630:exon:16 | 340 | Chr1: 2029287-2029626 | Arabidopsis thaliana |
AT1G06630:exon:5 | 234 | Chr1: 2027729-2027962 | Arabidopsis thaliana |
AT1G06630:exon:12 | 578 | Chr1: 2029050-2029627 | Arabidopsis thaliana |
AT1G06630:exon:7 | 1238 | Chr1: 2027739-2028976 | Arabidopsis thaliana |
AT1G06630:exon:8 | 33 | Chr1: 2027930-2027962 | Arabidopsis thaliana |
AT1G06630:exon:15 | 286 | Chr1: 2029287-2029572 | Arabidopsis thaliana |
AT1G06630:exon:6 | 78 | Chr1: 2027739-2027816 | Arabidopsis thaliana |
AT1G06630:exon:9 | 924 | Chr1: 2028053-2028976 | Arabidopsis thaliana |
AT1G06630:exon:11 | 150 | Chr1: 2029050-2029199 | Arabidopsis thaliana |
AT1G06630:exon:14 | 90 | Chr1: 2029287-2029376 | Arabidopsis thaliana |
AT1G06630:exon:18 | 205 | Chr1: 2030003-2030207 | Arabidopsis thaliana |
AT1G06630:exon:19 | 298 | Chr1: 2031091-2031388 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G06630:five_prime_UTR:3 | 357 | Chr1: 2027606-2027962 | Arabidopsis thaliana |
AT1G06630:five_prime_UTR:1 | 200 | Chr1: 2027606-2027805 | Arabidopsis thaliana |
AT1G06630:five_prime_UTR:2 | 211 | Chr1: 2027606-2027816 | Arabidopsis thaliana |
AT1G06630:five_prime_UTR:4 | 156 | Chr1: 2027661-2027816 | Arabidopsis thaliana |
AT1G06630:five_prime_UTR:5 | 234 | Chr1: 2027729-2027962 | Arabidopsis thaliana |
AT1G06630:five_prime_UTR:7 | 305 | Chr1: 2027739-2028043 | Arabidopsis thaliana |
AT1G06630:five_prime_UTR:8 | 33 | Chr1: 2027930-2027962 | Arabidopsis thaliana |
AT1G06630:five_prime_UTR:6 | 78 | Chr1: 2027739-2027816 | Arabidopsis thaliana |
AT1G06630:five_prime_UTR:9 | 18 | Chr1: 2028053-2028070 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G06630.5 | 1737 | Chr1: 2027606-2029651 |
AT1G06630.4 | 1796 | Chr1: 2027606-2029651 |
AT1G06630.6 | 1639 | Chr1: 2027606-2029651 |
AT1G06630.2 | 1650 | Chr1: 2027606-2029651 |
AT1G06630.7 | 1643 | Chr1: 2027661-2029626 |
AT1G06630.8 | 1736 | Chr1: 2027729-2029627 |
AT1G06630.9 | 1674 | Chr1: 2027739-2029572 |
AT1G06630.3 | 1471 | Chr1: 2027739-2029572 |
AT1G06630.1 | 1745 | Chr1: 2027739-2031388 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G06630:three_prime_UTR:3 | 437 | Chr1: 2029215-2029651 | Arabidopsis thaliana |
AT1G06630:three_prime_UTR:6 | 209 | Chr1: 2029443-2029651 | Arabidopsis thaliana |
AT1G06630:three_prime_UTR:1 | 214 | Chr1: 2028986-2029199 | Arabidopsis thaliana |
AT1G06630:three_prime_UTR:4 | 340 | Chr1: 2029287-2029626 | Arabidopsis thaliana |
AT1G06630:three_prime_UTR:2 | 413 | Chr1: 2029215-2029627 | Arabidopsis thaliana |
AT1G06630:three_prime_UTR:5 | 130 | Chr1: 2029443-2029572 | Arabidopsis thaliana |
AT1G06630:three_prime_UTR:7 | 215 | Chr1: 2031174-2031388 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE06650 | 1945 | Chr1: 2029752-2031696 | Arabidopsis thaliana |
AT1TE06655 | 147 | Chr1: 2030569-2030715 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE06650:transposon_fragment:1 | 268 | Chr1: 2029752-2030019 | Arabidopsis thaliana |
AT1TE06650:transposon_fragment:2 | 488 | Chr1: 2030716-2031203 | Arabidopsis thaliana |
AT1TE06655:transposon_fragment:1 | 147 | Chr1: 2030569-2030715 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...