help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide

Oops!

Error: 403

Gene : VIM4 A. thaliana

DB identifier  ? AT1G66040 Secondary Identifier  ? locus:2013800
Name  ? VARIANT IN METHYLATION 4 Brief Description  Zinc finger (C3HC4-type RING finger) family protein
TAIR Computational Description  Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
TAIR Curator Summary  predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.
TAIR Short Description  Zinc finger (C3HC4-type RING finger) family protein
TAIR Aliases  ORTH4, VIM4

0 Gene Rifs

1 Organism

8 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3021  
Location: Chr1:24583740-24586760 reverse strand

Gene models - VIM4 AT1G66040

? Gene models

Transcripts: 1  Exons: 9  Introns: 8 

Overlapping Features

? Genome features that overlap coordinates of this Gene

10 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
ORTH4_ARATH function E3 ubiquitin-protein ligase. May participate in CpG methylation-dependent transcriptional regulation (By similarity).
ORTH4_ARATH pathway Protein modification; protein ubiquitination.

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
methyl-CpNpG binding  ? ECO  
histone binding  ? ECO  
methyl-CpNpN binding  ? ECO  
ubiquitin-protein transferase activity  ? ECO  
methyl-CpG binding  ? ECO  
metal ion binding  ? ECO  
biological process
protein ubiquitination  ? ECO  
chromatin organization  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets