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Gene : VIM4 A. thaliana

DB identifier	AT1G66040	Secondary Identifier	locus:2013800
Name	VARIANT IN METHYLATION 4	Brief Description	Zinc finger (C3HC4-type RING finger) family protein

TAIR Computational Description	Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
TAIR Curator Summary	predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.
TAIR Short Description	Zinc finger (C3HC4-type RING finger) family protein
TAIR Aliases	ORTH4, VIM4

0 Gene Rifs

1 Organism

8 Publications

0 Synonyms

Genomics

Genome feature

Region:	gene	Length:	3021
Location:	Chr1:24583740-24586760 reverse strand

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10 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

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Curated comments from UniProt

Type	Comment	Proteins
ORTH4_ARATH	function	E3 ubiquitin-protein ligase. May participate in CpG methylation-dependent transcriptional regulation (By similarity).
ORTH4_ARATH	pathway	Protein modification; protein ubiquitination.

1 Proteins

Function

Gene Ontology

cellular component
nucleus	ECO
molecular function
methyl-CpNpG binding	ECO
histone binding	ECO
methyl-CpNpN binding	ECO
ubiquitin-protein transferase activity	ECO
methyl-CpG binding	ECO
metal ion binding	ECO
biological process
protein ubiquitination	ECO
chromatin organization	ECO

Interactions

Interaction Network

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Expression

Data Source:

BAR Webservices

Querying ATTED Service... Data Source: ATTED-II

Homology

0 Homologues

Other

6 Data Sets

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