| Type |
Details |
Score |
| Gene |
| Length: |
889
 |
| Chromosome Location: |
Chr5: 15883179-15884067 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Calcium-binding EF-hand family protein;(source:Araport11) |
| TAIR Curator Summary: |
Calmodulin like protein involved in negative regulation of pattern triggered immunity. |
| TAIR Short Description: |
Calcium-binding EF-hand family protein |
| TAIR Aliases: |
CML46 |
|
•
•
•
•
•
|
| Gene |
| Length: |
5334
|
| Chromosome Location: |
Chr5: 9189425-9194758 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
chloride channel D;(source:Araport11) |
| TAIR Curator Summary: |
Anion channel protein family member. Involved in negative regulation of pattern triggered immunity. |
| TAIR Short Description: |
chloride channel D |
| TAIR Aliases: |
ATCLC-D, AtCLCd, CLC-D, CLCd |
|
•
•
•
•
•
|
| Gene |
| Length: |
7087
|
| Chromosome Location: |
Chr5: 6146725-6153811 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
protein serine/threonine kinase;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a BEACH domain containing protein that is involved in targeting storage proteins to the protein storage vacuoles and effector triggered immunity to Psuedomonas syringae. |
| TAIR Short Description: |
protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases |
| TAIR Aliases: |
gfs12 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4639
|
| Chromosome Location: |
Chr1: 1607202-1611840 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
DNAse I-like superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays. |
| TAIR Short Description: |
DNAse I-like superfamily protein |
| TAIR Aliases: |
CVP2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2598
|
| Chromosome Location: |
Chr5: 18855955-18858552 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein;(source:Araport11) |
| TAIR Curator Summary: |
NULL |
| TAIR Short Description: |
NULL |
|
|
•
•
•
•
•
|
| Gene |
| Length: |
1662
|
| Chromosome Location: |
Chr5: 242450-244111 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Tautomerase/MIF superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Chemokine-like MDL protein; modulate flowering time and innate immunity in plants. |
| TAIR Short Description: |
Tautomerase/MIF superfamily protein |
| TAIR Aliases: |
MDL2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2294
|
| Chromosome Location: |
Chr3: 10667135-10669428 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Leucine-rich repeat protein kinase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Negative regulator of pattern-triggered immunity in complex with BIR3 and PLDγ1. |
| TAIR Short Description: |
Leucine-rich repeat protein kinase family protein |
| TAIR Aliases: |
BIR2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1328
|
| Chromosome Location: |
Chr3: 19163995-19165322 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Tautomerase/MIF superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Chemokine-like MDL protein; modulate flowering time and innate immunity in plants. |
| TAIR Short Description: |
Tautomerase/MIF superfamily protein |
| TAIR Aliases: |
MDL3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3760
|
| Chromosome Location: |
Chr4: 16112624-16116383 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Protein phosphatase 2C family protein;(source:Araport11) |
| TAIR Curator Summary: |
Protein phosphatase 2C family protein. Loss of function enhances immunity to bacterial pathogens. |
| TAIR Short Description: |
Protein phosphatase 2C family protein |
| TAIR Aliases: |
PP2C62 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2034
|
| Chromosome Location: |
Chr1: 21884018-21886051 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
mitogen-activated protein kinase homolog 2;(source:Araport11) |
| TAIR Curator Summary: |
encodes a mitogen-activated kinase involved in innate immunity The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
mitogen-activated protein kinase homolog 2 |
| TAIR Aliases: |
ATMPK2, MPK2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1739
|
| Chromosome Location: |
Chr5: 17951442-17953180 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
transmembrane protein;(source:Araport11) |
| TAIR Curator Summary: |
SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
PROSCOOP1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1273
|
| Chromosome Location: |
Chr5: 17953282-17954554 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
hypothetical protein;(source:Araport11) |
| TAIR Curator Summary: |
SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
PROSCOOP2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2251
|
| Chromosome Location: |
Chr5: 17968092-17970342 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
transmembrane protein;(source:Araport11) |
| TAIR Curator Summary: |
SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
PROSCOOP6 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1247
|
| Chromosome Location: |
Chr5: 17970210-17971456 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
transmembrane protein;(source:Araport11) |
| TAIR Curator Summary: |
SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
PROSCOOP7 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1346
|
| Chromosome Location: |
Chr5: 17973775-17975120 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
hypothetical protein;(source:Araport11) |
| TAIR Curator Summary: |
SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
PROSCOOP8 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1702
|
| Chromosome Location: |
Chr3: 8309209-8310910 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
myb domain protein 15;(source:Araport11) |
| TAIR Curator Summary: |
Member of the R2R3 factor gene family. Key regulator of lignin biosynthesis in effector-triggered immunity |
| TAIR Short Description: |
myb domain protein 15 |
| TAIR Aliases: |
ATMYB15, ATY19, MYB15 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2303
|
| Chromosome Location: |
Chr5: 8854507-8856809 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Protein kinase superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Receptor like kinase involved in HopZ1a effector triggered immunity. Interacts with ZAR1. Localization to membrane is dependent on N-terminal myristoylation domain. |
| TAIR Short Description: |
Protein kinase superfamily protein |
| TAIR Aliases: |
SZE1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3419
|
| Chromosome Location: |
Chr4: 10485116-10488534 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a putative apyrase involved in pollen exine pattern formation and anther dehiscence. |
| TAIR Short Description: |
GDA1/CD39 nucleoside phosphatase family protein |
| TAIR Aliases: |
APY7, AtAPY7 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3296
|
| Chromosome Location: |
Chr2: 864997-868292 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a putative apyrase involved in pollen exine pattern formation and anther dehiscence. |
| TAIR Short Description: |
GDA1/CD39 nucleoside phosphatase family protein |
| TAIR Aliases: |
APY6, AtAPY6 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2274
|
| Chromosome Location: |
Chr3: 22052121-22054394 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
lectin-receptor kinase;(source:Araport11) |
| TAIR Curator Summary: |
Member of Receptor kinase-like protein family. Represses stomatal immunity induced by Pseudomonas syringae pv. tomato DC3000. |
| TAIR Short Description: |
lectin-receptor kinase |
| TAIR Aliases: |
ATHLECRK, HLECRK, LecRK-V.5, LECRK1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
5233
|
| Chromosome Location: |
Chr3: 2782698-2787930 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
defective in exine formation protein (DEX1);(source:Araport11) |
| TAIR Curator Summary: |
Encodes DEX1 (defective in exine formation). Required for exine pattern formation during pollen development. |
| TAIR Short Description: |
defective in exine formation protein (DEX1) |
| TAIR Aliases: |
DEX1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3423
|
| Chromosome Location: |
Chr5: 18615175-18618597 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
ThiF family protein;(source:Araport11) |
| TAIR Curator Summary: |
Component of autophagy conjugation pathway. Required for proper senescence. Contributes to plant basal immunity towards fungal infection. |
| TAIR Short Description: |
ThiF family protein |
| TAIR Aliases: |
APG7, ATAPG7, ATATG7, ATG7, PEUP4 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4581
|
| Chromosome Location: |
Chr4: 7196991-7201571 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11) |
| TAIR Curator Summary: |
Leucine-rich repeat domain (NLR) receptor. Dominant negative alleles suppress catma3 autoimmunity. Co-regulates with WRKY19 basal levels of immunity to root-knot nematodes. |
| TAIR Short Description: |
Disease resistance protein (TIR-NBS-LRR class) family |
| TAIR Aliases: |
DSC1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1241
|
| Chromosome Location: |
Chr1: 26161551-26162791 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Natural antisense transcript overlaps with AT1G69570;(source:Araport11) |
| TAIR Curator Summary: |
Circadian regulated lncRNA, natural antisense gene of CDF5 (AT1G69570). Displays antiphasic expression pattern in relation to CDF5 expression (PMID:28758689). |
| TAIR Short Description: |
other RNA |
| TAIR Aliases: |
FLORE |
|
•
•
•
•
•
|
| Gene |
| Length: |
1810
|
| Chromosome Location: |
Chr5: 17753959-17755768 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of the NAP subfamily of ABC transporters whose expression pattern is regulated by light and sucrose. |
| TAIR Short Description: |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| TAIR Aliases: |
ABCI21, ATNAP2, ATPOP1, POP1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3506
|
| Chromosome Location: |
Chr5: 23314672-23318177 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Calmodulin-binding protein;(source:Araport11) |
| TAIR Curator Summary: |
Required for the expression of a guardee/decoy or a negative regulator of immunity mediated by receptors carrying an N-terminal Toll-interleukin-1 receptor-like domain. |
| TAIR Short Description: |
Calmodulin-binding protein |
| TAIR Aliases: |
CBP60b |
|
•
•
•
•
•
|
| Gene |
| Length: |
2614
|
| Chromosome Location: |
Chr3: 3016490-3019103 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Protein kinase superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of subfamily VIIa of the receptor-like cytoplasmic kinases (RLCKs). It contributes to pattern-triggered immunity in response to P. syringae. |
| TAIR Short Description: |
Protein kinase superfamily protein |
| TAIR Aliases: |
PBL39, PCRK1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1895
|
| Chromosome Location: |
Chr4: 14881689-14883583 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
UDP-D-glucuronate 4-epimerase 1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a UDP-D-glucuronate 4-epimerase involved in pectin biosynthesis in the cell wall and affects cell wall integrity and immunity to fungi and bacteria. |
| TAIR Short Description: |
UDP-D-glucuronate 4-epimerase 1 |
| TAIR Aliases: |
GAE1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1258
|
| Chromosome Location: |
Chr5: 17961019-17962276 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
transmembrane protein;(source:Araport11) |
| TAIR Curator Summary: |
Secreted peptide which functions in plant growth and pathogen defense. SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
PROSCOOP4, STMP10 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2097
|
| Chromosome Location: |
Chr2: 14629986-14632082 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Glycolipid transfer protein (GLTP) family protein;(source:Araport11) |
| TAIR Curator Summary: |
Gene product transports the glycolipid precursor sphingosine between membranes in vitro. Mutant constitutively expresses defense-related genes that accompany the hypersensitive response normally triggered by avirulent pathogens. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Glycolipid transfer protein (GLTP) family protein |
| TAIR Aliases: |
ACD11 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
406
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
417
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
1168
|
|
•
•
•
•
•
|
| Gene |
| Length: |
1618
|
| Chromosome Location: |
Chr1: 9205800-9207417 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein;(source:Araport11) |
| TAIR Curator Summary: |
Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein |
| TAIR Aliases: |
ATELF5A-2, ELF5A-2, FBR12 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3965
|
| Chromosome Location: |
Chr1: 27484240-27488204 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
PEP1 receptor 1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
PEP1 receptor 1 |
| TAIR Aliases: |
ATPEPR1, PEPR1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2120
|
| Chromosome Location: |
Chr5: 16089678-16091797 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Nodulin MtN3 family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes RPG1 (RUPTURED POLLEN GRAIN1), a member of the MtN3/saliva gene family. Crucial for exine pattern formation and cell integrity of microspores. |
| TAIR Short Description: |
Nodulin MtN3 family protein |
| TAIR Aliases: |
AtSWEET8, RPG1, SWEET8 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1925
|
| Chromosome Location: |
Chr2: 12879663-12881587 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Protein phosphatase 2C family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a chloroplast PP2C phosphatase that is required for efficient dephosphorylation of PSII proteins and involved in light acclimation.Loss of function enhances immunity to bacterial pathogens. |
| TAIR Short Description: |
Protein phosphatase 2C family protein |
| TAIR Aliases: |
AtPP2C26, PBCP |
|
•
•
•
•
•
|
| Gene |
| Length: |
3864
|
| Chromosome Location: |
Chr5: 91838-95701 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a tRNA methyltransferase that mediates the 2'-O-ribose methylation of selected tRNA species in the anticodon loop. Mutation of this gene compromises plant immunity against bacteria. |
| TAIR Short Description: |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| TAIR Aliases: |
AtTRM7a, SCS9, TRM7a |
|
•
•
•
•
•
|
| Gene |
| Length: |
1775
|
| Chromosome Location: |
Chr5: 3638191-3639965 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Protein kinase superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Similar to receptor like kinase but does not appear to have kinase activity (psuedokinase). It is involved in HopZ1a effector triggered immunity. Interacts with ZAR1 and ZED1.Localization to membrane is dependent on N-terminal myristoylation domain |
| TAIR Short Description: |
Protein kinase superfamily protein |
| TAIR Aliases: |
BKN2, SZE2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2285
|
| Chromosome Location: |
Chr5: 18950843-18953127 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Tetraspanin family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. |
| TAIR Short Description: |
Tetraspanin family protein |
| TAIR Aliases: |
TET1, TRN2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3012
|
| Chromosome Location: |
Chr4: 10304662-10307673 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons. |
| TAIR Short Description: |
Pentatricopeptide repeat (PPR) superfamily protein |
| TAIR Aliases: |
DOT4 |
|
•
•
•
•
•
|
| Gene |
| Length: |
11102
|
| Chromosome Location: |
Chr1: 20637333-20648434 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RNA polymerase II transcription mediator;(source:Araport11) |
| TAIR Curator Summary: |
Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. |
| TAIR Short Description: |
RNA polymerase II transcription mediators |
| TAIR Aliases: |
GCT, MAB2, MED13 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2599
|
| Chromosome Location: |
Chr3: 8603212-8605810 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
UDP-D-glucuronate 4-epimerase 6;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a UDP-D-glucuronate 4-epimerase involved in pectin biosynthesis in the cell wall and affects cell wall integrity and immunity to fungi and bacteria. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
UDP-D-glucuronate 4-epimerase 6 |
| TAIR Aliases: |
GAE6 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1698
|
| Chromosome Location: |
Chr5: 5509625-5511322 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a inositol 1,3,4-trisphosphate 5/6-kinase. Catalyzes the phosphorylation of phytic acid (InsP6) to the symmetric InsP7 isomer 5-InsP7. Together with IPK1 modulate crosstalks between SA-dependent immunity and phosphate-starvation responses. |
| TAIR Short Description: |
Inositol 1,3,4-trisphosphate 5/6-kinase family protein |
| TAIR Aliases: |
AtITPK1, ITPK1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4946
|
| Chromosome Location: |
Chr1: 26288228-26293173 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
alpha-amylase-like 3;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. |
| TAIR Short Description: |
alpha-amylase-like 3 |
| TAIR Aliases: |
AMY3, ATAMY3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2230
|
| Chromosome Location: |
Chr2: 10684118-10686347 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
stromal cell-derived factor 2-like protein precursor;(source:Araport11) |
| TAIR Curator Summary: |
Encodes an endoplasmic reticulum protein SDF2 (stromal-derived factor-2). Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR. EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity. |
| TAIR Short Description: |
stromal cell-derived factor 2-like protein precursor |
| TAIR Aliases: |
AtSDF2, ATSDL, SDF2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
631
|
| Chromosome Location: |
Chr2: 9903215-9903845 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
transmembrane protein;(source:Araport11) |
| TAIR Curator Summary: |
Encoding a precursor protein of a secreted peptide that is responsive to flg22 stimulus. Finetuning role in modulation of immunity through the regulation of SA and JA biosynthesis and signalling pathways. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
PIP3, prePIP3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2075
|
| Chromosome Location: |
Chr2: 14226668-14228742 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein with homology to members of the dihydroflavonol-4-reductase (DFR) superfamily. Its expression pattern suggests that AtCRL2 is involved in the synthesis and/or maintenance of vascular tissue. |
| TAIR Short Description: |
NAD(P)-binding Rossmann-fold superfamily protein |
| TAIR Aliases: |
AtCRL2, CRL2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1326
|
| Chromosome Location: |
Chr3: 21393963-21395288 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Protein kinase superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a pseudokinase that likely acts as a decoy to lure the P. syringae effector acetyltransferase HopZ1a to the ZAR1-resistance complex, resulting in effector-triggered immunity (ETI) activation. It is acetylated by HopZ1a. |
| TAIR Short Description: |
Protein kinase superfamily protein |
| TAIR Aliases: |
ZED1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2894
|
| Chromosome Location: |
Chr5: 17772856-17775749 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
C2H2-like zinc finger protein;(source:Araport11) |
| TAIR Curator Summary: |
NUC is a member of the BIRD group of transcriptional regulators and is required for the formative divisions that pattern the root. the ground tissue into cortex and endodermis. |
| TAIR Short Description: |
C2H2-like zinc finger protein |
| TAIR Aliases: |
AtIDD8, IDD8, NUC |
|
•
•
•
•
•
|
| Gene |
| Length: |
1957
|
| Chromosome Location: |
Chr5: 20745349-20747305 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
crumpled leaf;(source:Araport11) |
| TAIR Curator Summary: |
Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division. |
| TAIR Short Description: |
crumpled leaf |
| TAIR Aliases: |
CAA33, CRL |
|
•
•
•
•
•
|
| Gene |
| Length: |
4412
|
| Chromosome Location: |
Chr3: 5908934-5913345 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes DRM3 (Domains Rearranged Methyltransferase3), a catalytically mutated paralog of the cytosine methyltransferase DRM2. Despite being catalytically mutated, DRM3 is required for normal maintenance of non-CG DNA methylation, establishment of RNA-directed DNA methylation triggered by repeat sequences and accumulation of repeat-associated small RNAs. |
| TAIR Short Description: |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| TAIR Aliases: |
AtDRM3, DRM3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4098
|
| Chromosome Location: |
Chr1: 19987117-19991214 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
mitogen-activated protein kinase kinase kinase 3;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK5 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens. |
| TAIR Short Description: |
mitogen-activated protein kinase kinase kinase 3 |
| TAIR Aliases: |
MAP3KA, MAPKKK3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3859
|
| Chromosome Location: |
Chr5: 26695568-26699426 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
mitogen-activated protein kinase kinase kinase 5;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens. |
| TAIR Short Description: |
mitogen-activated protein kinase kinase kinase 5 |
| TAIR Aliases: |
MAPKKK5 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2517
|
| Chromosome Location: |
Chr3: 18362443-18364959 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
NAC domain containing protein 62;(source:Araport11) |
| TAIR Curator Summary: |
Transcription factor that serves as a molecular link between cold signals and pathogen resistance responses. Undergoes proteolytic processing triggered by cold-induced changes in membrane fluidity.It relocates from the plasma membrane to the nucleus in response to ER stress. NAC062 is phosphorylated by SnRK2.8 at Thr-142. |
| TAIR Short Description: |
NAC domain containing protein 62 |
| TAIR Aliases: |
ANAC062, NAC062, NTL6 |
|
•
•
•
•
•
|
| Gene |
| Length: |
9640
|
| Chromosome Location: |
Chr3: 1200331-1209970 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
exportin-4 protein;(source:Araport11) |
| TAIR Curator Summary: |
Ran effector. XPO4 coordinates the nuclear accumulation of TOPLESS and TOPLESS-Related transcription corepressors, which plays a role in regulating salicylic acid-mediated defense feedback and modulating the strength of immunity induced by cpr5, a nucleoporin mutant. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
XPO4 |
|
•
•
•
•
•
|
| Gene |
| Length: |
6102
|
| Chromosome Location: |
Chr3: 4988008-4994109 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Leucine-rich repeat transmembrane protein kinase;(source:Araport11) |
| TAIR Curator Summary: |
Encodes LRR-RLK protein that is localized to the plasma membrane and is involved in regulation of plant innate immunity to microbes. LIK1 is phosphorylated by CERK1, a kinase involved in chitin perception. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Leucine-rich repeat transmembrane protein kinase |
| TAIR Aliases: |
LIK1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2556
|
| Chromosome Location: |
Chr5: 3216881-3219436 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Phototropic-responsive NPH3 family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves. |
| TAIR Short Description: |
Phototropic-responsive NPH3 family protein |
| TAIR Aliases: |
DOT3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2871
|
| Chromosome Location: |
Chr3: 23150779-23153649 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
DNAJ heat shock family protein;(source:Araport11) |
| TAIR Curator Summary: |
J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR. EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity. |
| TAIR Short Description: |
DNAJ heat shock family protein |
| TAIR Aliases: |
ATERDJ3B, ERDJ3B |
|
•
•
•
•
•
|
| Gene |
| Length: |
3537
|
| Chromosome Location: |
Chr3: 2582362-2585898 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
phospholipase C 2;(source:Araport11) |
| TAIR Curator Summary: |
Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. It is involved in auxin biosynthesis and signaling, modulating development of both male and female gametophytes. It also regulates MAMP-triggered immunity by modulating ROS production. |
| TAIR Short Description: |
phospholipase C 2 |
| TAIR Aliases: |
ATPLC2, PLC2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2201
|
| Chromosome Location: |
Chr2: 12368220-12370420 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
armadillo/beta-catenin repeat protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a U-box E3 ubiquitin ligase involved in ubiquitination of pattern recognition receptor FLS2.pub12/pub13 double mutants enhanced chitin-induced ROS production and callose deposition suggesting they function redundantly to negatively regulate immune response to fungal elicitor. |
| TAIR Short Description: |
PLANT U-BOX 12 |
| TAIR Aliases: |
AtPUB12, PUB12 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2513
|
| Chromosome Location: |
Chr4: 9966720-9969232 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
AT hook motif DNA-binding family protein;(source:Araport11) |
| TAIR Curator Summary: |
AT-hook motif containing nuclear localized (AHL) DNA-binding protein; substrate of immune MAPKs. Phosphorylation regulates AHL13 protein stability and thereby its immune functions. Regulates key factors of jasmonic acid biosynthesis and signaling and affects immunity toward Pseudomonas syringae and Botrytis cinerea pathogens. |
| TAIR Short Description: |
AT hook motif DNA-binding family protein |
| TAIR Aliases: |
AHL13 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3001
|
| Chromosome Location: |
Chr1: 17282749-17285749 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Granulin repeat cysteine protease family protein;(source:Araport11) |
| TAIR Curator Summary: |
Cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21). Has been shown to have peptide ligase activity and protease activity in vitro. RD21 is involved in immunity to the necrotrophic fungal pathogen Botrytis cinerea.Activity detected in root, leaf, flower and cell culture. |
| TAIR Short Description: |
Granulin repeat cysteine protease family protein |
| TAIR Aliases: |
RD21, RD21A |
|
•
•
•
•
•
|
| Gene |
| Length: |
2221
|
| Chromosome Location: |
Chr1: 29173409-29175629 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Peptidoglycan-binding LysM domain-containing protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a lysin-motif protein mediating bacterial peptidoglycan sensing and immunity to bacterial infection. Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant. It contains a C-terminal GPI anchor signal and is an ortholog of OsLYP4 and OsLYP6. |
| TAIR Short Description: |
Peptidoglycan-binding LysM domain-containing protein |
| TAIR Aliases: |
LYM3, LYP3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2946
|
| Chromosome Location: |
Chr5: 19695767-19698712 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
FK506- and rapamycin-binding protein 15 kD-2;(source:Araport11) |
| TAIR Curator Summary: |
Endoplasmic reticulum (ER) localized immunophilin protein which possesses PPIase activity. Positively regulates plant immunity in response to Phytophthora infection. Host target of PcAvr3a12 during early P. capsici infection. Involved in ER stress sensing and is required for ER stress-mediated plant immunity. |
| TAIR Short Description: |
FK506- and rapamycin-binding protein 15 kD-2 |
| TAIR Aliases: |
FKBP15-2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1324
|
| Chromosome Location: |
Chr2: 15165213-15166536 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Glycine-rich protein family;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Glycine-rich protein family |
| TAIR Aliases: |
DOT1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
865
|
| Chromosome Location: |
Chr4: 7401087-7401951 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
azelaic acid induced 1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes AZI1 (AZELAIC ACID INDUCED 1). Involved in the priming of salicylic acid induction and systemic immunity triggered by pathogen or azelaic acid. Targeting if AZI1 to chloroplasts is increased during SAR induction and that localization requires the PRR domain.It is involved in the uptake and movement of the azelaic acid signal. AZI1 uses a previously undescribed variant of the signal anchor proteins mechanism to target plastids. AZI1 uses a bipartite N-terminal signature: a non-cleavable TMD that anchors the protein to membranes, followed by a proline rich region with features that are shared with bona fide chloroplastic transit peptides. flg22 MAMP treatment strongly induces AZI1/EARLI1 protein levels and increases their relative enrichment in the plastid fraction. |
| TAIR Short Description: |
azelaic acid induced 1 |
| TAIR Aliases: |
AZI1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2081
|
| Chromosome Location: |
Chr5: 17964416-17966496 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
transmembrane protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a PPR protein involved in mitochondrial functioning. Mutants suppress cell wall defects caused by C17 chemical inhibitor. Mutants are defective in cytochrome c maturation and activation of mitochondrial retrograde signalling. SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
CAD1, PROSCOOP5 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1323
|
| Chromosome Location: |
Chr3: 1221422-1222744 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
phosphoenolpyruvate carboxylase kinase 2;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light and is responsive to both phosphate (Pi) and phosphite (Phi) in shoots. |
| TAIR Short Description: |
phosphoenolpyruvate carboxylase kinase 2 |
| TAIR Aliases: |
ATPPCK2, PEPCK2, PPCK2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1317
|
| Chromosome Location: |
Chr4: 11840134-11841450 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a hybrid proline-rich protein that contains two tandem PRD-8CMs (proline-rich domain-eight cysteine motif). Its expression is induced by JA and certain pathogens. This pattern of induction, combined with overexpression and RNAi induced phenotypes, suggests involvement in defense response to pathogens. |
| TAIR Short Description: |
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein |
| TAIR Aliases: |
AtDHyPRP1, DHyPRP1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
6480
|
| Chromosome Location: |
Chr5: 6195689-6202168 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
chromatin remodeling factor17;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of the A. thaliana imitation switch (AtISWI) subfamily of chromatin remodeling factors. Double mutation in CHR17 and CHR11 results in the loss of the evenly spaced nucleosome pattern in gene bodies, but does not affect nucleosome density. |
| TAIR Short Description: |
chromatin remodeling factor17 |
| TAIR Aliases: |
CHR17 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1905
|
| Chromosome Location: |
Chr5: 17984527-17986431 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
hypothetical protein;(source:Araport11) |
| TAIR Curator Summary: |
Precursor of serine-rich endogenous peptide which regulates defense response and root elongation. Has properties of phytocytokines, activates the phospholipid signaling pathway, regulates reactive oxygen species response, and is perceived in a BAK1 co-receptor-dependent manner. SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
PROSCOOP12 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3909
|
| Chromosome Location: |
Chr5: 3509833-3513741 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
homeobox protein knotted-1-like 4;(source:Araport11) |
| TAIR Curator Summary: |
A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root. |
| TAIR Short Description: |
KNOTTED1-like homeobox gene 4 |
| TAIR Aliases: |
KNAT4 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2556
|
| Chromosome Location: |
Chr3: 8194606-8197161 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
indole-3-acetic acid 7;(source:Araport11) |
| TAIR Curator Summary: |
Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. Pseudomonas syringae type III effector AvrRpt2 stimulates AXR2 protein turnover. |
| TAIR Short Description: |
indole-3-acetic acid 7 |
| TAIR Aliases: |
AXR2, IAA7 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4519
|
| Chromosome Location: |
Chr5: 22496196-22500714 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
tornado 1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. |
| TAIR Short Description: |
tornado 1 |
| TAIR Aliases: |
LOP1, TRN1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3786
|
| Chromosome Location: |
Chr2: 11650358-11654143 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
transcription factor-like protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots. |
| TAIR Short Description: |
transcription factor-related |
| TAIR Aliases: |
LHW |
|
•
•
•
•
•
|
| Gene |
| Length: |
5836
|
| Chromosome Location: |
Chr2: 12264928-12270763 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Mutants have radially swollen roots but do not exhibit defects in abundance or orientation of cortical microtubules, nor are microfibrils reduced. Cellulose synthesis is also unchanged with respect to wild type. There is a disruption in the normal pattern of cell wall placement. |
| TAIR Short Description: |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| TAIR Aliases: |
RSW7 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2773
|
| Chromosome Location: |
Chr3: 19779978-19782750 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
ROP interactive partner 4;(source:Araport11) |
| TAIR Curator Summary: |
Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A. |
| TAIR Short Description: |
ROP interactive partner 4 |
| TAIR Aliases: |
MIDD1, RIP3, RIP4 |
|
•
•
•
•
•
|
| Gene |
| Length: |
5934
|
| Chromosome Location: |
Chr5: 25400317-25406250 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RNA-metabolising metallo-beta-lactamase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of the metallo-beta-lactamase protein family that plays a vital role in embryo morphogenesis and apical-basal pattern formation by regulating chloroplast development. In bacteria, RNase J plays an important role in rRNA maturation and in the 5′ stability of mRNA. |
| TAIR Short Description: |
RNA-metabolising metallo-beta-lactamase family protein |
| TAIR Aliases: |
AtRNJ, emb2746, RNJ |
|
•
•
•
•
•
|
| Gene |
| Length: |
4182
|
| Chromosome Location: |
Chr5: 25982254-25986435 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
AGAMOUS-like 31;(source:Araport11) |
| TAIR Curator Summary: |
Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function. |
| TAIR Short Description: |
AGAMOUS-like 31 |
| TAIR Aliases: |
AGL31, MAF2 |
|
•
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•
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| Gene |
| Length: |
4055
|
| Chromosome Location: |
Chr5: 24207689-24211743 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
target of early activation tagged (EAT) 2;(source:Araport11) |
| TAIR Curator Summary: |
AP2 family transcription factor that is involved in regulation of flowering and innate immunity.Interacts with CRY1 and CRY2 during flowering as part of a regulatory circuit including FT and CO. TOE1/TOE2 are also targets of MiR172b repression and functions in regulation of innate immunity via repression of FLS. |
| TAIR Short Description: |
target of early activation tagged (EAT) 2 |
| TAIR Aliases: |
TOE2 |
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•
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| Gene |
| Length: |
2252
|
| Chromosome Location: |
Chr1: 7680390-7682641 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
lysm domain GPI-anchored protein 1 precursor;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a lysin-motif protein mediating bacterial peptidoglycan sensing and immunity to bacterial infection. Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant. It contains a C-terminal GPI anchor signal and is an ortholog of OsLYP4 and OsLYP6. Phosphatidylinositol 4-phosphate 5-kinase (PIP5K) enzyme family member. |
| TAIR Short Description: |
lysm domain GPI-anchored protein 1 precursor |
| TAIR Aliases: |
LYM1, LYP2 |
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•
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| Gene |
| Length: |
1660
|
| Chromosome Location: |
Chr5: 17958305-17959964 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
novel transcribed region;(source:Araport11) |
| TAIR Curator Summary: |
AT5G00585 (PROSCOOP3) is currently annotated as long noncoding RNA. The gene is composed of two exons (supported by several transcript assemblies) and including a small ORF. The CDS coordinates are : join(17958404..17958518,17959316..17959362) (Sébastien Aubourg, pers. communication). SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
PROSCOOP3 |
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•
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| Gene |
| Length: |
1618
|
| Chromosome Location: |
Chr1: 9425280-9426897 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
glutathione S-transferase tau 13;(source:Araport11) |
| TAIR Curator Summary: |
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). GSTU13 acts in the pathogen triggered pathway for indole glucosinolate metabolisms that involves also PENETRATION2 myrosinase. It is likely the enzyme that conjugates GSH with unstable indol-3-ylmethyl-ITCs formed upon PEN2-mediated IG hydrolysis, particularly in the branch of this pathway in which 4-substituted IGs are processed. |
| TAIR Short Description: |
glutathione S-transferase tau 13 |
| TAIR Aliases: |
ATGSTU13, GST12, GSTU13 |
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•
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| Gene |
| Length: |
4150
|
| Chromosome Location: |
Chr1: 22645923-22650072 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
S-domain-1 29;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a membrane localized S-domain receptor kinase that is involved in lipopolysaccharide (LPS) sensing. SD1-29 detected LPS of Pseudomonas and Xanthomonas species for which it serves as a microbe associated molecular pattern triggering innate immunity. Loses of function mutants are hyper susceptible to P.syringae. |
| TAIR Short Description: |
S-domain-1 29 |
| TAIR Aliases: |
LORE, SD1-29 |
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•
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| Gene |
| Length: |
3434
|
| Chromosome Location: |
Chr1: 29272074-29275507 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
auxin response factor 17;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a transcriptional regulator that directly binds to the promoter of MYB108 and plays a crucial role in anther dehiscence, pollen wall pattern formation, tapetum development, and auxin signal transduction in anthers. It is post-transcriptionally regulated by miR160 and regulates early auxin response genes. |
| TAIR Short Description: |
auxin response factor 17 |
| TAIR Aliases: |
ARF17 |
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•
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| Gene |
| Length: |
2586
|
| Chromosome Location: |
Chr1: 1136078-1138663 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
AUX/IAA transcriptional regulator family protein;(source:Araport11) |
| TAIR Curator Summary: |
Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling and is a positive modulator of natural leaf senescence. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. |
| TAIR Short Description: |
AUX/IAA transcriptional regulator family protein |
| TAIR Aliases: |
AtIAA17, AXR3, IAA17 |
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•
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| Gene |
| Length: |
872
|
| Chromosome Location: |
Chr1: 5644572-5645443 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
SAUR-like auxin-responsive protein family;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a clade III SAUR gene with a distinctive expression pattern in root meristems. It is normally expressed in the quiescent center and cortex/endodermis initials and upon auxin stimulation, the expression is found in the endodermal layer. Overexpression studies suggest roles in cell expansion and auxin transport. |
| TAIR Short Description: |
SAUR-like auxin-responsive protein family |
| TAIR Aliases: |
SAUR41 |
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•
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| Gene |
| Length: |
2369
|
| Chromosome Location: |
Chr2: 14224268-14226636 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein with homology to members of the dihydroflavonol-4-reductase (DFR) superfamily. The expression pattern of AtCRL1 indicates that CRL1 has a role in embryogenesis and seed germination. AtCRL1 is induced by ABA, drought and heat, and is highly expressed in seeds. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
NAD(P)-binding Rossmann-fold superfamily protein |
| TAIR Aliases: |
AtCRL1, CRL1 |
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•
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•
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•
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| Gene |
| Length: |
3167
|
| Chromosome Location: |
Chr3: 17123731-17126897 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
plant U-box 13;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. Involved in ubiquitination of pattern recognition receptor FLS2. |
| TAIR Short Description: |
plant U-box 13 |
| TAIR Aliases: |
ATPUB13, PUB13 |
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•
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| Gene |
| Length: |
2779
|
| Chromosome Location: |
Chr3: 2946239-2949017 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Homeodomain-like superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response. |
| TAIR Short Description: |
Homeodomain-like superfamily protein |
| TAIR Aliases: |
LCL5, RVE8 |
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•
•
•
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•
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| Gene |
| Length: |
1952
|
| Chromosome Location: |
Chr5: 13701290-13703241 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
minichromosome instability 12 (mis12)-like protein;(source:Araport11) |
| TAIR Curator Summary: |
encodes a homologue of the yeast (S. pombe) Mis12 (minichromosome instability) protein. MIS12 co-localizes with 180 bp repeats of centromeric DNA throughout the cell cycle with a similar pattern to AtCENH3/HTR12. Neither of these two proteins completely cover the 180 bp regions based on FISH analysis. |
| TAIR Short Description: |
minichromosome instability 12 (mis12)-like |
| TAIR Aliases: |
ATMIS12, MIS12 |
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•
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•
•
•
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| Gene |
| Length: |
1061
|
| Chromosome Location: |
Chr5: 815610-816670 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Legume lectin family protein;(source:Araport11) |
| TAIR Curator Summary: |
Belongs to the group of early SA-activated genes. Involved in resistance to Pst Avr-Rpm1 as a component of the SA35 mediated defense processes associated to the ETI response. Involved in resistance to P.syringae pv. tomato Avr-Rpm1 in Arabidopsis, as a component of the SA-mediated defense processes associated with the effector-triggered immunity response. |
| TAIR Short Description: |
Legume lectin family protein |
| TAIR Aliases: |
SAI-LLP1 |
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•
•
•
•
•
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| Gene |
| Length: |
3847
|
| Chromosome Location: |
Chr2: 19191247-19195093 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein;(source:Araport11) |
| TAIR Curator Summary: |
ROP (Rho of plant GTPases) family member Involved in cell wall patterning. Encodes ROP inactivator, regulates the formation of ROP-activated domains; these in turn determined the pattern of cell wall pits. Positively regulates pit formation, but negatively regulates pit size, required for periodic formation of secondary cell wall pits. |
| TAIR Short Description: |
Rho GTPase activating protein with PAK-box/P21-Rho-binding domain |
| TAIR Aliases: |
ROPGAP3 |
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•
•
•
•
•
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| Gene |
| Length: |
10436
|
| Chromosome Location: |
Chr4: 200874-211309 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RNA polymerase II transcription mediator;(source:Araport11) |
| TAIR Curator Summary: |
Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype. |
| TAIR Short Description: |
RNA polymerase II transcription mediators |
| TAIR Aliases: |
CCT, CRP, MED12 |
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•
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•
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•
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| Gene |
| Length: |
2801
|
| Chromosome Location: |
Chr3: 3617264-3620064 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
rac GTPase activating protein;(source:Araport11) |
| TAIR Curator Summary: |
ROP (Rho of plant GTPases) family member Involved in cell wall patterning. Encodes ROP inactivator, regulates the formation of ROP-activated domains; these in turn determined the pattern of cell wall pits. Positively regulates pit formation, but negatively regulates pit size, required for periodic formation of secondary cell wall pits. |
| TAIR Short Description: |
rac GTPase activating protein |
| TAIR Aliases: |
ROPGAP4 |
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•
•
•
•
•
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| Gene |
| Length: |
3541
|
| Chromosome Location: |
Chr4: 10949573-10953113 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Leucine-rich receptor-like protein kinase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Leucine-rich receptor-like protein kinase family protein |
| TAIR Aliases: |
BAM3 |
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•
•
•
•
•
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| Gene |
| Length: |
2758
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| Chromosome Location: |
Chr5: 17166702-17169459 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
inositol-pentakisphosphate 2-kinase 1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes an inositol tetra-/pentaphosphate 2-kinase, involved in the biosynthesis of phytic acid, a regulator of intracellular signaling, a highly abundant animal antinutrient, and a phosphate and mineral storage compound in plant seeds. Is also required for growth and modulates phosphate homeostasis at the transcriptional level. Together with ITPK1 modulate crosstalks between SA-dependent immunity and phosphate-starvation responses. |
| TAIR Short Description: |
inositol-pentakisphosphate 2-kinase 1 |
| TAIR Aliases: |
AtIP5, ATIPK1, IPK1 |
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•
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•
•
•
|
| mRNA |
| Length: |
2988
|
| Chromosome Location: |
Chr1: 1607202-1611840 |
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•
•
|
| mRNA |
| Length: |
3518
|
| Chromosome Location: |
Chr1: 1607227-1611815 |
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