| Type |
Details |
Score |
| Gene |
| Length: |
1780
 |
| Chromosome Location: |
Chr3: 9979841-9981620 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Ferritin/ribonucleotide reductase-like family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. |
| TAIR Short Description: |
Ferritin/ribonucleotide reductase-like family protein |
| TAIR Aliases: |
ATTSO2, TSO2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3304
|
| Chromosome Location: |
Chr3: 18393747-18397050 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. |
| TAIR Short Description: |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| TAIR Aliases: |
DIN11 |
|
•
•
•
•
•
|
| Gene |
| Length: |
7780
|
| Chromosome Location: |
Chr1: 1754130-1761909 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
trithorax-like protein 2;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1. |
| TAIR Short Description: |
trithorax-like protein 2 |
| TAIR Aliases: |
ATX2, SDG30 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2660
|
| Chromosome Location: |
Chr2: 8030960-8033619 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11) |
| TAIR Curator Summary: |
Essential gene (embryo lethal) that is similar to component of splicosome. Regulates embryonic pattern formation through Pol II-Mediated transcription of WOX2 an PIN7 (DOI:10.1016/j.isci.2019.09.004). JANUS positively regulates PLT1 expression in the root meristem by recruiting RNA polymerase II (Pol II) to PLT1 and by interacting with PLT1. Nuclear accumulation of JANUS in root meristem depends on IMB4. (DOI:10.1105/tpc.20.00108 ) |
| TAIR Short Description: |
RNA-binding (RRM/RBD/RNP motifs) family protein |
| TAIR Aliases: |
EMB2444, JANUS |
|
•
•
•
•
•
|
| Gene |
| Length: |
3250
|
| Chromosome Location: |
Chr3: 7300444-7303693 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Integrase-type DNA-binding superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. |
| TAIR Short Description: |
Integrase-type DNA-binding superfamily protein |
| TAIR Aliases: |
AtPLT1, PLT1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2393
|
| Chromosome Location: |
Chr4: 15493989-15496381 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
homeobox protein knotted-1-like 5;(source:Araport11) |
| TAIR Curator Summary: |
A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone. |
| TAIR Short Description: |
KNOTTED1-like homeobox gene 5 |
| TAIR Aliases: |
KNAT5 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3443
|
| Chromosome Location: |
Chr1: 18977176-18980618 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Integrase-type DNA-binding superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. |
| TAIR Short Description: |
Integrase-type DNA-binding superfamily protein |
| TAIR Aliases: |
PLT2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1779
|
| Chromosome Location: |
Chr2: 14751541-14753319 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RING/U-box superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
ATL9 is an E3 ligase-like protein that is induced by chitin oligomers and contributes to fungal resistance.It differs from other members of the ATL family in that it has a PEST domain. It is a short lived protein that is subject to proteosome mediated degradation. It is expressed in many aerial tissues in a pattern that varies with developmental stage. |
| TAIR Short Description: |
RING/U-box superfamily protein |
| TAIR Aliases: |
ATL2G, ATL9 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2827
|
| Chromosome Location: |
Chr1: 25041833-25044659 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Mannose-6-phosphate isomerase, type I;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein with phosphomannose isomerase activity that is involved in synthesis of ascorbic acid. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. |
| TAIR Short Description: |
Mannose-6-phosphate isomerase, type I |
| TAIR Aliases: |
DIN9, PMI2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3299
|
| Chromosome Location: |
Chr5: 6833564-6836862 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Raffinose synthase family protein;(source:Araport11) |
| TAIR Curator Summary: |
encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Raffinose synthase family protein |
| TAIR Aliases: |
DIN10, RS6 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3542
|
| Chromosome Location: |
Chr5: 24264488-24268029 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Concanavalin A-like lectin protein kinase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a legume-type lectin receptor kinase that is structurally distinct from the mammalian extracellular ATP receptors and acts as an extracellular ATP receptor in Arabidopsis. Extracellular ATP acts as a damage-associated molecular pattern in plants, and its signaling through P2K1 is important for mounting an effective defense response against various pathogenic microorganisms. It also plays a role in cell wall-plasma membrane adhesion. |
| TAIR Short Description: |
Concanavalin A-like lectin protein kinase family protein |
| TAIR Aliases: |
DORN1, LecRK-I.9, P2K1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4230
|
| Chromosome Location: |
Chr1: 29749101-29753330 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
topoisomerase II-associated protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a component of the mRNA decapping machinery that is found in complexes with and is phosphorylated by MPK4. The protein can be found in P-bodies after treatment with PAMPs. Pat1 mutants exhibit dwarfism and de-repressed immunity dependent on the immune receptor SUMM2. The pat1 constitutive defense phenotype is suppressed by summ2 such that pat1 summ2 mutants display a wild-type phenotype in response to biotrophic and necrotrophic pathogens. |
| TAIR Short Description: |
NULL |
| TAIR Aliases: |
PAT1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
6454
|
| Chromosome Location: |
Chr5: 24294704-24301157 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation. signaling |
| TAIR Short Description: |
DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain |
| TAIR Aliases: |
ATSIZ1, SIZ1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
27265
|
| Chromosome Location: |
Chr3: 17801289-17828553 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Serine/Threonine-kinase ATM-like protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Suppresses leaf senescence triggered by DNA double-strand break through epigenetic control of senescence-associated genes. Characterization of mutants suggest a role homologous recombination for DNA damage repair in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres. |
| TAIR Short Description: |
ataxia-telangiectasia mutated |
| TAIR Aliases: |
ATATM, ATM, PIG1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4879
|
| Chromosome Location: |
Chr5: 18867616-18872494 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11) |
| TAIR Curator Summary: |
VICTR (VARIATION IN COMPOUND TRIGGERED ROOT growth response) encodes a TIR-NB-LRR (for Toll-Interleukin1 Receptor-nucleotide binding-Leucine-rich repeat) protein. VICTR is necessary for DFPM-induced root growth arrest and inhibition of abscisic acid-induced stomatal closing (DFPM is [5-(3,4-dichlorophenyl)furan-2-yl]-piperidine-1-ylmethanethione)(PMID:21620700). DFPM-mediated root growth arrest is accession-specific and depends on EDS1 and PAD4; Col-0 has a functional copy of VICTR. Induction of the VICTR gene by DFPM treatment requires functional VICTR (Col). A close homolog to VICTR, named VICTL (At5g46510) lies in tandem with VICTR. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Disease resistance protein (TIR-NBS-LRR class) family |
| TAIR Aliases: |
ACQOS, VICTR |
|
•
•
•
•
•
|
| Gene |
| Length: |
4923
|
| Chromosome Location: |
Chr5: 3315401-3320323 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
AINTEGUMENTA-like 6;(source:Araport11) |
| TAIR Curator Summary: |
Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. It is also required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions. Intronic sequences are required for its expression in flowers.Acts redundantly with PLT5 and 7 in lateral root pattern formation. |
| TAIR Short Description: |
AINTEGUMENTA-like 6 |
| TAIR Aliases: |
AIL6, PLT3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1517
|
| Chromosome Location: |
Chr1: 11035992-11037508 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
F-box family protein;(source:Araport11) |
| TAIR Curator Summary: |
Required for the proper identity of the floral meristem. Involved in establishing the whorled pattern of floral organs, in the control of specification of the floral meristem, and in the activation of APETALA3 and PISTILLATA. UFO is found at the AP3 promoter in a LFY-dependent manner, suggesting that it works with LFY to regulate AP3 expression. UFO may also promote the ubiquitylation of LFY. |
| TAIR Short Description: |
F-box family protein |
| TAIR Aliases: |
UFO |
|
•
•
•
•
•
|
| Gene |
| Length: |
6074
|
| Chromosome Location: |
Chr3: 1940907-1946980 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
chromatin-remodeling protein 11;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. Double mutation in CHR17 and CHR11 results in the loss of the evenly spaced nucleosome pattern in gene bodies, but does not affect nucleosome density. |
| TAIR Short Description: |
chromatin-remodeling protein 11 |
| TAIR Aliases: |
CHR11 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2548
|
| Chromosome Location: |
Chr5: 15821293-15823840 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Vesicle transport v-SNARE family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Vesicle transport v-SNARE family protein |
| TAIR Aliases: |
ATVTI11, ATVTI1A, ITT3, SGR4, VTI11, VTI1A, ZIG, ZIG1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4522
|
| Chromosome Location: |
Chr4: 16086311-16090832 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
BRI1-associated receptor kinase;(source:Araport11) |
| TAIR Curator Summary: |
Leu-rich receptor Serine/threonine protein kinase. Component of BR signaling that interacts with BRI1 in vitro and in vivo to form a heterodimer. Brassinolide-dependent association of BRI1 and BAK1 in vivo. Phosphorylation of both BRI1 and BAK1 on Thr residues was BR dependent. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome. Contributes to postinvasive immunity against Alternaria brassicola. |
| TAIR Short Description: |
BRI1-associated receptor kinase |
| TAIR Aliases: |
ATBAK1, ATSERK3, BAK1, ELG, RKS10, SERK3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
4585
|
| Chromosome Location: |
Chr3: 8631482-8636066 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RNA recognition motif (RRM)-containing protein;(source:Araport11) |
| TAIR Curator Summary: |
Physically interacts with, and promotes canonical splicing of, transcripts encoding defense signaling proteins, including the key negative regulator of pattern recognition receptor signaling complexes, CALCIUM-DEPENDENT PROTEIN KINASE 28 (CPK28). Upon immune activation by Plant Elicitor Peptides (Peps), IRR is dephosphorylated, disrupting interaction with CPK28 transcripts and resulting in accumulation of an alternative splice variant encoding a truncated CPK28 protein with impaired kinase activity and diminished function as a negative regulator. |
| TAIR Short Description: |
RNA recognition motif (RRM)-containing protein |
| TAIR Aliases: |
IRR |
|
•
•
•
•
•
|
| Gene |
| Length: |
4285
|
| Chromosome Location: |
Chr3: 22216540-22220824 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Glycosyl hydrolase superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Glycosyl hydrolase superfamily protein |
| TAIR Aliases: |
BGLU30, DIN2, SRG2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2658
|
| Chromosome Location: |
Chr5: 8735944-8738601 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
homeobox protein knotted-1-like 3;(source:Araport11) |
| TAIR Curator Summary: |
A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia |
| TAIR Short Description: |
KNOTTED1-like homeobox gene 3 |
| TAIR Aliases: |
KNAT3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3696
|
| Chromosome Location: |
Chr3: 18417568-18421263 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Leucine-rich receptor-like protein kinase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Leucine-rich receptor-like protein kinase family protein |
| TAIR Aliases: |
BAM2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3772
|
| Chromosome Location: |
Chr5: 26281642-26285413 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Leucine-rich receptor-like protein kinase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
Leucine-rich receptor-like protein kinase family protein |
| TAIR Aliases: |
BAM1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2318
|
| Chromosome Location: |
Chr5: 25236945-25239262 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RAC-like 10;(source:Araport11) |
| TAIR Curator Summary: |
ROP (Rho of plant GTPases) family member involved in cell wall patterning. Locally activated to form plasma membrane domains, which direct formation of cell wall pits in metaxylem vessel cells through interaction with cortical microtubules. Pattern formation of cell wall pits is governed by ROP activation via a reaction-difusion mechanism. Patterning involves active ROP1 recruiting BDR1 to the plasma membrane in pit regions. BRD1 in turn recruits the actin binding protein WAL. |
| TAIR Short Description: |
RAC-like 10 |
| TAIR Aliases: |
ARAC10, ATRAC10, ATROP11, RAC10, ROP11 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3097
|
| Chromosome Location: |
Chr2: 9051725-9054821 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
magnesium transporter, putative (DUF803);(source:Araport11) |
| TAIR Curator Summary: |
Encodes a putative magnesium transporter that was identified through a forward genetic screen, directly isolating antiviral RNAi-defective (avi) mutant using a Cucumber Mosaic Virus (CMV) mutant. Compared to Wildtype Col-0, avi2 mutant showed severe disease symptom after viral infection and viral accumulation was significantly increased while viral siRNAs and virus-activated endogenous siRNAs (vasiRNAs) were reduced in avi2 mutant. Detailed genetic study indicated that AVI2 modulated RNAi-mediated antiviral immunity by regulating the biogenesis of secondary viral siRNAs and vasiRNAs in Arabidopsis. |
| TAIR Short Description: |
Protein of unknown function (DUF803) |
| TAIR Aliases: |
AVI2, ENOR3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
11437
|
| Chromosome Location: |
Chr3: 15233845-15245281 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
HOPM interactor 7;(source:Araport11) |
| TAIR Curator Summary: |
AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein. AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family. The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells. HopM1 mediates the destruction of AtMIN7 via the host proteasome. Critical for cuticle formation and related leaf surface defense against the bacterial pathogen Pseudomonas syringae pathovar tomato (Pto). |
| TAIR Short Description: |
HOPM interactor 7 |
| TAIR Aliases: |
ATMIN7, BEN1, BIG5, MIN7 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3134
|
| Chromosome Location: |
Chr1: 10379020-10382153 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
MAC/Perforin domain-containing protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. |
| TAIR Short Description: |
MAC/Perforin domain-containing protein |
| TAIR Aliases: |
CAD1, NSL2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3592
|
| Chromosome Location: |
Chr3: 17437840-17441431 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
glutamine-dependent asparagine synthase 1;(source:Araport11) |
| TAIR Curator Summary: |
encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. |
| TAIR Short Description: |
glutamine-dependent asparagine synthase 1 |
| TAIR Aliases: |
ASN1, AT-ASN1, DIN6 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2758
|
| Chromosome Location: |
Chr5: 383153-385910 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RHO guanyl-nucleotide exchange factor 7;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Involved in cell wall patterning. Encodes ROP activator, regulates the formation of ROP-activated domains; these in turn determine the pattern of cell wall pits. Required for periodic formation of secondary cell wall pits. |
| TAIR Short Description: |
RHO guanyl-nucleotide exchange factor 7 |
| TAIR Aliases: |
ATROPGEF7, ROPGEF7 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3445
|
| Chromosome Location: |
Chr5: 24197971-24201415 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
pseudo-response regulator 3;(source:Araport11) |
| TAIR Curator Summary: |
Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL. |
| TAIR Short Description: |
pseudo-response regulator 3 |
| TAIR Aliases: |
APRR3, PRR3 |
|
•
•
•
•
•
|
| Gene |
| Length: |
8171
|
| Chromosome Location: |
Chr4: 7201522-7209692 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
protein kinase family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K). This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9), At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19). Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301. Co-regulates with DSC1 basal levels of immunity to root-knot nematodes. |
| TAIR Short Description: |
protein kinase family protein |
| TAIR Aliases: |
ATWRKY19, MAPKKK11, MEKK4, WRKY19 |
|
•
•
•
•
•
|
| Gene |
| Length: |
1057
|
| Chromosome Location: |
Chr1: 12357910-12358966 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
one-helix protein 2;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions. Together with OHP1, OHP2 is essential for the formation of photosystem II reaction center, even though neither is a part of the final PSII RC. It forms a complex with OHP1 and HCF244, D1, D2, PsbI, and cytochrome b559 at an early stage of PSII de novo assembly and of PSII repair under high-light conditions. |
| TAIR Short Description: |
one-helix protein 2 |
| TAIR Aliases: |
OHP2 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
506
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
936
|
|
•
•
•
•
•
|
| Gene |
| Length: |
6555
|
| Chromosome Location: |
Chr5: 5515707-5522261 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
SART-1 family;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. In the roots DOT2 appears to be require for normal meristem organization and maintenance and the proper expression of PIN and PLT genes. |
| TAIR Short Description: |
SART-1 family |
| TAIR Aliases: |
DOT2, MDF |
|
•
•
•
•
•
|
| Gene |
| Length: |
3652
|
| Chromosome Location: |
Chr1: 18098081-18101732 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
nucleolin like 1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes ATNUC-L1 (NUCLEOLIN LIKE 1), the predominant form of the two nucleolin proteins found in Arabidopsis. This protein is involved in rRNA processing, ribosome biosynthesis, and vascular pattern formation. PARL1 localizes to the nucleolus and parl1 mutants accumulate elevated levels of the unspliced 35S pre-rRNA. parl1 mutants also have defects in cotyledon, leaf, sepal, and petal vein patterning and have reduced stature, reduced fertility, increased bushiness, and reduced root length. The sugar-induced expression of ribosome proteins is also reduced in parl1 mutants. The mRNA is cell-to-cell mobile. |
| TAIR Short Description: |
nucleolin like 1 |
| TAIR Aliases: |
ATNUC-L1, NUC-L1, NUC1, PARL1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
6192
|
| Chromosome Location: |
Chr1: 4788463-4794654 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
sec7 domain-containing protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions. BFA inhibits GNOM trafficking and BFA resistant lines are more resistant to cold stress. |
| TAIR Short Description: |
sec7 domain-containing protein |
| TAIR Aliases: |
112A-2A, EMB30, GN, GNOM, MIZ2, VAN7 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2151
|
| Chromosome Location: |
Chr5: 21901704-21903854 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11) |
| TAIR Curator Summary: |
Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2. Together with CUC3-DA1-UBP15 part of a regulatory module which controls the initiation of axillary meristems, thereby determining plant architecture. Regulates the axillary meristem initiation, directly binding to the DA1 promoter. |
| TAIR Short Description: |
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
| TAIR Aliases: |
ANAC098, ATCUC2, CUC2 |
|
•
•
•
•
•
|
| Gene |
| Length: |
5013
|
| Chromosome Location: |
Chr5: 22424502-22429514 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
DNA topoisomerase I alpha;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing. |
| TAIR Short Description: |
DNA topoisomerase I alpha |
| TAIR Aliases: |
FAS5, MGO1, TOP1, TOP1ALPHA |
|
•
•
•
•
•
|
| Gene |
| Length: |
2240
|
| Chromosome Location: |
Chr4: 11000771-11003010 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a floral inducer that is a homolog of FT. Plants overexpressing this gene flower earlier than Col. Loss-of-function mutations flower later in short days. TSF and FT play overlapping roles in the promotion of flowering, with FT playing the dominant role and together playing an antagonistic role to TFL1 in the determination of inflorescence meristem identity. .TSF sequences show extensive variation in different accessions and may contribute to quantitative variation in flowering time in these accessions. TSF has a complex pattern of spatial expression; it is expressed mainly in phloem and expression is regulated by daylength and vernalization. |
| TAIR Short Description: |
PEBP (phosphatidylethanolamine-binding protein) family protein |
| TAIR Aliases: |
TSF |
|
•
•
•
•
•
|
| Gene |
| Length: |
3715
|
| Chromosome Location: |
Chr5: 23252989-23256703 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
AINTEGUMENTA-like 5;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of the AP2 family of transcriptional regulators. May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.essential for the developmental transition between the embryonic and vegetative phases in plants. Overexpression results in the formation of somatic embryos on cotyledons. It is also required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions. Acts redundantly with PLT3 and 7 in lateral root pattern formation. |
| TAIR Short Description: |
AINTEGUMENTA-like 5 |
| TAIR Aliases: |
AIL5, CHO1, EMK, PLT5 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
617
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
925
|
|
•
•
•
•
•
|
| Gene |
| Length: |
2353
|
| Chromosome Location: |
Chr2: 18883377-18885729 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
RHO guanyl-nucleotide exchange factor 4;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Mutants exhibit longer root hairs under phosphate-deficient conditions. Involved in cell wall patterning. Encodes ROP activator, regulates the formation of ROP-activated domains; these in turn determine the pattern of cell wall pits. Forms a dimer that interacts with activated ROP11 in vivo, which could provide positive feedback for ROP activation. Required for periodic formation of secondary cell wall pits |
| TAIR Short Description: |
RHO guanyl-nucleotide exchange factor 4 |
| TAIR Aliases: |
ATROPGEF4, GEF4, RHS11, ROPGEF4 |
|
•
•
•
•
•
|
| Gene |
| Length: |
2855
|
| Chromosome Location: |
Chr3: 23384988-23387842 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
FORKED 1;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a pleckstrin homology domain- and DUF828-containing protein. Mutants have defects in leaf vascular pattering, with vascular bundles that fail to meet distally in both the cotyledons and leaves. Necessary to the formation of the closed leaf vascular pattern characteristic of dicot leaves in response to auxin. Redundant with FKD2. FKD1 may influence PIN1 localization in an auxin dependent manner. proposed to be a key component of the auxin canalization pathway. FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions. |
| TAIR Short Description: |
FORKED 1 |
| TAIR Aliases: |
FKD1 |
|
•
•
•
•
•
|
| Gene |
| Length: |
3462
|
| Chromosome Location: |
Chr1: 8180189-8183650 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Auxin efflux carrier family protein;(source:Araport11) |
| TAIR Curator Summary: |
Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux. |
| TAIR Short Description: |
Auxin efflux carrier family protein |
| TAIR Aliases: |
ATPIN7, PIN7 |
|
•
•
•
•
•
|
| Gene |
| Length: |
887
|
| Chromosome Location: |
Chr3: 12349047-12349933 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
qua-quine starch;(source:Araport11) |
| TAIR Curator Summary: |
QQS is an orphan gene that arose recently in the Arabidopsis thaliana lineage. It was first identified in a screen for genes with altered expression pattern in SS3 mutants which make an abundance of starch. Overexpression of QQS in Arabidopsis increases protein content and decreases total starch content. Thus it appears to function to modulate carbon/nitrogen allocation in Arabidopsis. Over expression of QQS in soybean, rice and maize also results in an increase in protein and decrease in starch levels suggesting that QQS affects similar pathways in a wide range of plants. QQS interacts with NF-YC4 in Arabidopsis and NF-YC4 homologs in rice, soybean and maize. In Arabidopsis QQS is localized the the cytoplasm and when complexed with NF-YC4 , it localizes to the nucleus. Putative OXS2-binding DEGs were constitutively activated by OXS2. |
| TAIR Short Description: |
qua-quine starch |
| TAIR Aliases: |
DEG6, QQS |
|
•
•
•
•
•
|
| Gene |
| Length: |
3773
|
| Chromosome Location: |
Chr2: 14325206-14328978 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein;(source:Araport11) |
| TAIR Curator Summary: |
ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF. ETT is also a target of AP2; integrateing the functions of AGAMOUS and APETALA2 in floral meristem determinacy. Positive regulation of drought stress response genes. |
| TAIR Short Description: |
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related |
| TAIR Aliases: |
ARF3, ETT |
|
•
•
•
•
•
|
| Gene |
| Length: |
820
|
| Chromosome Location: |
Chr2: 11664978-11665797 |
| Organism . Short Name: |
A. thaliana |
| TAIR Computational Description: |
CLAVATA3;(source:Araport11) |
| TAIR Curator Summary: |
One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis. Belongs to a large gene family called CLE for CLAVATA3/ESR-related. Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone. The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide. The functional form of CLV3 (MCLV3) was first reported to be a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline (Ito et al., Science 2006, 313:842; Kondo et al., Science 2006, 313:845). Ohyama et al. (2009) later reported that the active mature CLV3 is a 13-amino-acid arabinosylated glycopeptide (Nature Chemical Biology, 5:578). CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein. It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function. Results obtained from whole seedlings challenge the concept that the immune receptor FLS2 perceives the meristematic regulatory peptide CLV3p in mesophyll, seedlings, and SAM cells and that CLV3p contributes to SAM immunity against bacterial infection (PMID:22923673). |
| TAIR Short Description: |
CLAVATA3 |
| TAIR Aliases: |
AtCLV3, CLV3 |
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
558
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
361
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
1451
|
|
•
•
•
•
•
|
| Protein |
| Organism . Name: |
Arabidopsis thaliana |
| Length: |
593
|
|
•
•
•
•
•
|
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