help  | faq  | software  | BAR

Search our database by keyword

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, pathways, authors, ontology terms, etc. (e.g. eve, embryo, zen, allele)
  • Use OR to search for either of two terms (e.g. fly OR drosophila) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. dros* for partial matches or fly AND NOT embryo to exclude a term

Search results 101 to 200 out of 6518 for Microbe-associated molecular pattern

<< First    < Previous  |  Next >    Last >>
0.042s

Categories

Hits by Category

Hits by Organism

Type Details Score
Protein
BAG2_ARATH-2 | Q0WPX7-2
Organism . Name: Arabidopsis thaliana
Length: 296  
•
•
•
•
•
Protein
BAG1_ARATH | Q0WUQ1
Organism . Name: Arabidopsis thaliana
Length: 342  
•
•
•
•
•
Protein
BAG3_ARATH | Q9LYP4
Organism . Name: Arabidopsis thaliana
Length: 303  
•
•
•
•
•
Protein
BAG6_ARATH | O82345
Organism . Name: Arabidopsis thaliana
Length: 1043  
•
•
•
•
•
Protein
BAG4_ARATH | Q8RX71
Organism . Name: Arabidopsis thaliana
Length: 269  
•
•
•
•
•
Gene
AT5G40260 | locus:2173782 | SWEET8 | -
Length: 2120  
Chromosome Location: Chr5: 16089678-16091797
Organism . Short Name: A. thaliana
TAIR Computational Description: Nodulin MtN3 family protein;(source:Araport11)
TAIR Curator Summary: Encodes RPG1 (RUPTURED POLLEN GRAIN1), a member of the MtN3/saliva gene family. Crucial for exine pattern formation and cell integrity of microspores.
TAIR Short Description: Nodulin MtN3 family protein
TAIR Aliases: AtSWEET8, RPG1, SWEET8
•
•
•
•
•
Protein Domain
IPR045273
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: each investigated root tissue is able to perceive flg22 if FLS2 is present and that tissue identity is a major element of microbe-associated molecular patterns (MAMPs)perception in roots.
Organism: A. thaliana
Gene: FLS2
PubMed Id: 25627577
•
•
•
•
•
Gene
AT5G46700 | locus:2178570 | TRN2 | TORNADO 2
Length: 2285  
Chromosome Location: Chr5: 18950843-18953127
Organism . Short Name: A. thaliana
TAIR Computational Description: Tetraspanin family protein;(source:Araport11)
TAIR Curator Summary: Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis.
TAIR Short Description: Tetraspanin family protein
TAIR Aliases: TET1, TRN2
•
•
•
•
•
Gene
AT4G18750 | locus:2124137 | DOT4 | DEFECTIVELY ORGANIZED TRIBUTARIES 4
Length: 3012  
Chromosome Location: Chr4: 10304662-10307673
Organism . Short Name: A. thaliana
TAIR Computational Description: Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.
TAIR Short Description: Pentatricopeptide repeat (PPR) superfamily protein
TAIR Aliases: DOT4
•
•
•
•
•
Gene
AT1G55325 | locus:1005716738 | GCT | GRAND CENTRAL
Length: 11102  
Chromosome Location: Chr1: 20637333-20648434
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA polymerase II transcription mediator;(source:Araport11)
TAIR Curator Summary: Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation.
TAIR Short Description: RNA polymerase II transcription mediators
TAIR Aliases: GCT, MAB2, MED13
•
•
•
•
•
GO Term
GO:0009953 | dorsal/ventral pattern formation
Description: The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
•
•
•
•
•
Gene
AT5G59720 | locus:2174269 | HSP18.2 | heat shock protein 18.2
Length: 978  
Chromosome Location: Chr5: 24062323-24063300
Organism . Short Name: A. thaliana
TAIR Computational Description: heat shock protein 18.2;(source:Araport11)
TAIR Curator Summary: encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.
TAIR Short Description: heat shock protein 18.2
TAIR Aliases: HSP18.2
•
•
•
•
•
Gene
AT3G53990 | locus:2084525 | AT3G53990 | -
Length: 1895  
Chromosome Location: Chr3: 19989292-19991186
Organism . Short Name: A. thaliana
TAIR Computational Description: Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes universal stress protein (USP). Functions as a molecular chaperone under heat shock and oxidative stress conditions. Chaperone activity and assembly into complexes is redox regulated.
TAIR Short Description: Adenine nucleotide alpha hydrolases-like superfamily protein
TAIR Aliases: AtUSP, USP17
•
•
•
•
•
Interaction Term
MI:2232 | molecular association
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: Molecular Connections
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: molecular association
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: molecular function
Type: synonym
•
•
•
•
•
Publication
26822404
First Author: Trempel F
Title: Altered glycosylation of exported proteins, including surface immune receptors, compromises calcium and downstream signaling responses to microbe-associated molecular patterns in Arabidopsis thaliana.
Year: 2016
Journal: BMC Plant Biol
Volume: 16
Pages: 31
•
•
•
•
•
Publication
11333309
First Author: Sassa N
Title: The molecular characterization and in situ expression pattern of pea SCARECROW gene.
Year: 2001
Journal: Plant Cell Physiol
Volume: 42
Pages: 385-94
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: FLS2 complexes regulate the expression of AtCLCd, further supporting a role for AtCLCd in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI).
Organism: A. thaliana
Gene: FLS2
PubMed Id: 24449384
•
•
•
•
•
GO Term
GO:0140895 | cell surface toll-like receptor signaling pathway
Description: The series of molecular signals initiated by a ligand binding to a cell surface pattern recognition receptor (PRR) of the toll-like family.
•
•
•
•
•
Gene
AT1G69830 | locus:2196759 | AMY3 | alpha-amylase-like 3
Length: 4946  
Chromosome Location: Chr1: 26288228-26293173
Organism . Short Name: A. thaliana
TAIR Computational Description: alpha-amylase-like 3;(source:Araport11)
TAIR Curator Summary: Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms.
TAIR Short Description: alpha-amylase-like 3
TAIR Aliases: AMY3, ATAMY3
•
•
•
•
•
Protein
A0A5S9XIE7_ARATH | A0A5S9XIE7
Organism . Name: Arabidopsis thaliana
Length: 551  
•
•
•
•
•
Protein
BAG5_ARATH | O65373
Organism . Name: Arabidopsis thaliana
Length: 215  
•
•
•
•
•
Protein
BAG8_ARATH | Q9LIB3
Organism . Name: Arabidopsis thaliana
Length: 551  
•
•
•
•
•
Protein
A0A654FI36_ARATH | A0A654FI36
Organism . Name: Arabidopsis thaliana
Length: 551  
•
•
•
•
•
Protein
A0A178VFR6_ARATH | A0A178VFR6
Organism . Name: Arabidopsis thaliana
Length: 553  
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: MKP1 is a negative regulator of signaling pathways required for some, but not all, early and late pathogen-associated molecular pattern responses.
Organism: A. thaliana
Gene: MPK1
PubMed Id: 21447069
•
•
•
•
•
Gene
AT2G33600 | locus:2051018 | CRL2 | CCR(Cinnamoyl coA:NADP oxidoreductase)-like 2
Length: 2075  
Chromosome Location: Chr2: 14226668-14228742
Organism . Short Name: A. thaliana
TAIR Computational Description: NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a protein with homology to members of the dihydroflavonol-4-reductase (DFR) superfamily. Its expression pattern suggests that AtCRL2 is involved in the synthesis and/or maintenance of vascular tissue.
TAIR Short Description: NAD(P)-binding Rossmann-fold superfamily protein
TAIR Aliases: AtCRL2, CRL2
•
•
•
•
•
GO Term
GO:0061227 | pattern specification involved in mesonephros development
Description: Any developmental process that results in the creation of defined areas or spaces within the mesonephros to which cells respond and eventually are instructed to differentiate.
•
•
•
•
•
Publication
1382980
First Author: Han CD
Title: Molecular cloning and characterization of iojap (ij), a pattern striping gene of maize.
Year: 1992
Journal: EMBO J
Volume: 11
Pages: 4037-46
•
•
•
•
•
Publication
18751887
First Author: Liu JX
Title: Molecular characterization and expression pattern of fetuin-B in gibel carp (Carassius auratus gibelio).
Year: 2008
Journal: Biochem Genet
Volume: 46
Pages: 620-33
•
•
•
•
•
Gene
AT5G44160 | locus:2167608 | NUC | nutcracker
Length: 2894  
Chromosome Location: Chr5: 17772856-17775749
Organism . Short Name: A. thaliana
TAIR Computational Description: C2H2-like zinc finger protein;(source:Araport11)
TAIR Curator Summary: NUC is a member of the BIRD group of transcriptional regulators and is required for the formative divisions that pattern the root. the ground tissue into cortex and endodermis.
TAIR Short Description: C2H2-like zinc finger protein
TAIR Aliases: AtIDD8, IDD8, NUC
•
•
•
•
•
Gene
AT5G51020 | locus:2157398 | CRL | CRUMPLED LEAF
Length: 1957  
Chromosome Location: Chr5: 20745349-20747305
Organism . Short Name: A. thaliana
TAIR Computational Description: crumpled leaf;(source:Araport11)
TAIR Curator Summary: Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division.
TAIR Short Description: crumpled leaf
TAIR Aliases: CAA33, CRL
•
•
•
•
•
Gene
AT2G20690 | locus:2051394 | AT2G20690 | -
 
Length: 1670  
Chromosome Location: Chr2: 8923305-8924974
Organism . Short Name: A. thaliana
TAIR Computational Description: lumazine-binding family protein;(source:Araport11)
TAIR Curator Summary: A synthetic gene encoding the catalytic domain of the Arabidopsis thaliana gene At2g20690 was recombinant expressed in E. coli demonstrating the molecular function of riboflavin synthase. The mRNA is cell-to-cell mobile.
TAIR Short Description: lumazine-binding family protein
•
•
•
•
•
Gene
AT5G49940 | locus:2158849 | NFU2 | NIFU-like protein 2
Length: 2012  
Chromosome Location: Chr5: 20315390-20317401
Organism . Short Name: A. thaliana
TAIR Computational Description: NIFU-like protein 2;(source:Araport11)
TAIR Curator Summary: Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.
TAIR Short Description: NIFU-like protein 2
TAIR Aliases: ATCNFU2, NFU2
•
•
•
•
•
Gene
AT1G53570 | locus:2024832 | MAP3KA | mitogen-activated protein kinase kinase kinase 3
Length: 4098  
Chromosome Location: Chr1: 19987117-19991214
Organism . Short Name: A. thaliana
TAIR Computational Description: mitogen-activated protein kinase kinase kinase 3;(source:Araport11)
TAIR Curator Summary: Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK5 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens.
TAIR Short Description: mitogen-activated protein kinase kinase kinase 3
TAIR Aliases: MAP3KA, MAPKKK3
•
•
•
•
•
Gene
AT5G66850 | locus:2174969 | MAPKKK5 | mitogen-activated protein kinase kinase kinase 5
Length: 3859  
Chromosome Location: Chr5: 26695568-26699426
Organism . Short Name: A. thaliana
TAIR Computational Description: mitogen-activated protein kinase kinase kinase 5;(source:Araport11)
TAIR Curator Summary: Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens.
TAIR Short Description: mitogen-activated protein kinase kinase kinase 5
TAIR Aliases: MAPKKK5
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SERK3/BAK1 appears to integrate diverse perception events into downstream pathogen-associated molecular pattern responses, leading to immunity against a range of invading microbes.
Organism: A. thaliana
Gene: BAK1
PubMed Id: 17626179
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: G protein signaling is directly activated by the pathogen-associated molecular pattern flagellin peptide 22 through its LRR RLK, FLS2, and co-receptor BAK1.
Organism: A. thaliana
Gene: BAK1
PubMed Id: 27235398
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: pattern formation
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: growth pattern
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: pattern biosynthesis
Type: synonym
•
•
•
•
•
GO Term
GO:0003002 | regionalization
Description: The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.
•
•
•
•
•
Protein Domain
IPR008701
•
•
•
•
•
Protein Domain
IPR008798
•
•
•
•
•
GO Term
GO:0035661 | MyD88-dependent toll-like receptor 2 signaling pathway
Description: The series of molecular signals initiated by a ligand binding to a toll-like 2 receptor where the MyD88 adaptor molecule mediates transduction of the signal. Toll-like 2 receptors are pattern recognition receptors that bind microbial pattern motifs to initiate an innate immune response.
•
•
•
•
•
GO Term
GO:0060831 | smoothened signaling pathway involved in dorsal/ventral neural tube patterning
Description: The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened contributing to the dorsal/ventral pattern of the neural tube.
•
•
•
•
•
Publication
25788175
First Author: Tatematsu K
Title: A molecular mechanism that confines the activity pattern of miR165 in Arabidopsis leaf primordia.
Year: 2015
Journal: Plant J
Volume: 82
Pages: 596-608
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: These results provide insight into the roles of phosphorylation in the regulation of MKP1 during pathogen-associated molecular pattern signaling and resistance to bacteria.
Organism: A. thaliana
Gene: MKP1
PubMed Id: 29070514
•
•
•
•
•
Gene
AT1G03475 | locus:2825062 | LIN2 | LESION INITIATION 2
Length: 2456  
Chromosome Location: Chr1: 868853-871308
Organism . Short Name: A. thaliana
TAIR Computational Description: Coproporphyrinogen III oxidase;(source:Araport11)
TAIR Curator Summary: Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.
TAIR Short Description: Coproporphyrinogen III oxidase
TAIR Aliases: ATCPO-I, HEMF1, LIN2
•
•
•
•
•
Gene
AT5G10250 | locus:2145387 | DOT3 | DEFECTIVELY ORGANIZED TRIBUTARIES 3
Length: 2556  
Chromosome Location: Chr5: 3216881-3219436
Organism . Short Name: A. thaliana
TAIR Computational Description: Phototropic-responsive NPH3 family protein;(source:Araport11)
TAIR Curator Summary: Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves.
TAIR Short Description: Phototropic-responsive NPH3 family protein
TAIR Aliases: DOT3
•
•
•
•
•
GO Term
GO:0061004 | pattern specification involved in kidney development
Description: Any developmental process that results in the creation of defined areas or spaces within the kidney to which cells respond and eventually are instructed to differentiate.
•
•
•
•
•
GO Term
GO:0072268 | pattern specification involved in metanephros development
Description: Any developmental process that results in the creation of defined areas or spaces within the metanephros to which cells respond and eventually are instructed to differentiate.
•
•
•
•
•
Interaction Term
MI:1263 | molecular connections
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: molecular force measurement
Type: synonym
•
•
•
•
•
SO Term
SO:0100002 | molecular_contact_region
Description: A region that is involved a contact with another molecule.
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: molecular contact region
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: molecular function regulator
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: molecular hydrogen metabolism
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: molecular hydrogen biosynthesis
Type: synonym
•
•
•
•
•
GO Term
GO:0003674 | molecular_function
Description: A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
•
•
•
•
•
GO Term
GO:0098772 | molecular function regulator activity
Description: A molecular function regulator regulates the activity of its target via non-covalent binding that does not result in covalent modification to the target. Examples of molecular function regulators include regulatory subunits of multimeric enzymes and channels. Mechanisms of regulation include allosteric changes in the target and competitive inhibition.
•
•
•
•
•
Gene
AT2G37340 | locus:2049766 | RS2Z33 | arginine/serine-rich zinc knuckle-containing protein 33
Length: 2554  
Chromosome Location: Chr2: 15670147-15672700
Organism . Short Name: A. thaliana
TAIR Computational Description: arginine/serine-rich zinc knuckle-containing protein 33;(source:Araport11)
TAIR Curator Summary: encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
TAIR Short Description: arginine/serine-rich zinc knuckle-containing protein 33
TAIR Aliases: AT-RS2Z33, ATRSZ33, RS2Z33, RSZ33
•
•
•
•
•
Gene
AT2G28830 | locus:2053190 | PUB12 | PLANT U-BOX 12
Length: 2201  
Chromosome Location: Chr2: 12368220-12370420
Organism . Short Name: A. thaliana
TAIR Computational Description: armadillo/beta-catenin repeat protein;(source:Araport11)
TAIR Curator Summary: Encodes a U-box E3 ubiquitin ligase involved in ubiquitination of pattern recognition receptor FLS2.pub12/pub13 double mutants enhanced chitin-induced ROS production and callose deposition suggesting they function redundantly to negatively regulate immune response to fungal elicitor.
TAIR Short Description: PLANT U-BOX 12
TAIR Aliases: AtPUB12, PUB12
•
•
•
•
•
Protein Domain
IPR010914
•
•
•
•
•
Gene
AT2G44830 | locus:2055017 | AT2G44830 | -
Length: 3557  
Chromosome Location: Chr2: 18489607-18493163
Organism . Short Name: A. thaliana
TAIR Computational Description: Protein kinase superfamily protein;(source:Araport11)
TAIR Curator Summary: AGCVIII kinase involved in the pulse-induced first positive phototropism. Plasma-membrane-associated element of a molecular rheostat that modulates auxin flux through developing protophloem sieve elements (PPSEs) while interacting with BRX, thereby timing PPSE differentiation. Activates PIN-mediated auxin efflux.
TAIR Short Description: Protein kinase superfamily protein
TAIR Aliases: AGC1-3, PAX
•
•
•
•
•
Gene
AT5G14530 | locus:2222612 | AT5G14530 | -
Length: 2427  
Chromosome Location: Chr5: 4684597-4687023
Organism . Short Name: A. thaliana
TAIR Computational Description: Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a low molecular weight nuclear WDR protein which displays functional homology to the Swd2 protein, an essential subunit of the yeast histone methylation COMPASS complex. APRF1 acts upstream of FLC and promotes flowering under long day conditions.
TAIR Short Description: Transducin/WD40 repeat-like superfamily protein
TAIR Aliases: APRF1, S2La
•
•
•
•
•
Gene
AT2G25110 | locus:2040199 | SDF2 | stromal cell-derived factor 2-like protein precursor
Length: 2230  
Chromosome Location: Chr2: 10684118-10686347
Organism . Short Name: A. thaliana
TAIR Computational Description: stromal cell-derived factor 2-like protein precursor;(source:Araport11)
TAIR Curator Summary: Encodes an endoplasmic reticulum protein SDF2 (stromal-derived factor-2). Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR. EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity.
TAIR Short Description: stromal cell-derived factor 2-like protein precursor
TAIR Aliases: AtSDF2, ATSDL, SDF2
•
•
•
•
•
Publication
8628228
First Author: Busch M
Title: Molecular analysis of the Arabidopsis pattern formation of gene GNOM: gene structure and intragenic complementation.
Year: 1996
Journal: Mol Gen Genet
Volume: 250
Pages: 681-91
•
•
•
•
•
Publication
24449384
First Author: Guo W
Title: The chloride channel family gene CLCd negatively regulates pathogen-associated molecular pattern (PAMP)-triggered immunity in Arabidopsis.
Year: 2014
Journal: J Exp Bot
Volume: 65
Pages: 1205-15
•
•
•
•
•
Gene
AT2G36120 | locus:2053524 | DOT1 | DEFECTIVELY ORGANIZED TRIBUTARIES 1
Length: 1324  
Chromosome Location: Chr2: 15165213-15166536
Organism . Short Name: A. thaliana
TAIR Computational Description: Glycine-rich protein family;(source:Araport11)
TAIR Curator Summary: Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects. The mRNA is cell-to-cell mobile.
TAIR Short Description: Glycine-rich protein family
TAIR Aliases: DOT1
•
•
•
•
•
Gene
AT1G59610 | locus:2202847 | DL3 | dynamin-like 3
Length: 7945  
Chromosome Location: Chr1: 21893142-21901086
Organism . Short Name: A. thaliana
TAIR Computational Description: dynamin-like 3;(source:Araport11)
TAIR Curator Summary: A high molecular weight GTPase whose GTP-binding domain shows a low homology to those of other plant dynamin-like proteins.Contains a pleckstrin homologous domain. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis. The mRNA is cell-to-cell mobile.
TAIR Short Description: dynamin-like 3
TAIR Aliases: ADL3, CF1, DL3, DRP2B
•
•
•
•
•
GO Term
GO:0048629 | trichome patterning
Description: The regionalization process of establishing the non-random spatial arrangement of trichomes on the surface and margin of a leaf. Process involves signaling between adjacent epidermal cells that results in differentiation of some epidermal cells into trichomes.
•
•
•
•
•
GO Term
GO:0052078 | disruption of host pathogen-associated molecular pattern receptor signaling pathway
Description: Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of a host PMAP signaling pathwaay, initiated by a ligand binding of a pattern recognition receptor (PRR) to activate a plant innate immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
•
•
•
•
•
GO Term
GO:0052034 | effector-mediated suppression of host pattern-triggered immunity
Description: A process mediated by a molecule secreted by a symbiont that results in the suppression of the innate immune response of the host organism via recognition of a microbe-associated molecular pattern. The innate immune response is the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction.
•
•
•
•
•
Gene
AT4G03210 | locus:2125437 | XTH9 | xyloglucan endotransglucosylase/hydrolase 9
Length: 1828  
Chromosome Location: Chr4: 1415617-1417444
Organism . Short Name: A. thaliana
TAIR Computational Description: xyloglucan endotransglucosylase/hydrolase 9;(source:Araport11)
TAIR Curator Summary: Encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
TAIR Short Description: xyloglucan endotransglucosylase/hydrolase 9
TAIR Aliases: XTH9
•
•
•
•
•
Gene
AT3G08030 | locus:2077467 | AT3G08030 | -
Length: 2240  
Chromosome Location: Chr3: 2563803-2566042
Organism . Short Name: A. thaliana
TAIR Computational Description: DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642);(source:Araport11)
TAIR Curator Summary: The mRNA of this gene is expressed in viable seeds. Its detection in a dry seed lot has potential for use as a molecular marker for germination performance as absence of expression correlates with decreased germination. Encodes DUF642 cell wall protein.
TAIR Short Description: Protein of unknown function, DUF642
TAIR Aliases: AthA2-1
•
•
•
•
•
Gene
AT4G11940 | locus:2118016 | AT4G11940 | -
Length: 795  
Chromosome Location: Chr4: 7168173-7168967
Organism . Short Name: A. thaliana
TAIR Computational Description: hypothetical protein;(source:Araport11)
TAIR Curator Summary: Encodes a nuclear localized dosage sensitive paternally expressed imprinted gene. It is a member of a family of molecular chaperones called J-domain. Loss of ADM function suppresses seed abortion of triploid embryos and also partially rescues the effect of mea mutations.
TAIR Short Description: NULL
TAIR Aliases: ADM
•
•
•
•
•
GO Term
GO:0021798 | forebrain dorsal/ventral pattern formation
Description: The formation of specific regional progenitor domains along the dorsal-ventral axis in the developing forebrain.
•
•
•
•
•
GO Term
GO:0009880 | embryonic pattern specification
Description: The process that results in the patterns of cell differentiation that will arise in an embryo.
•
•
•
•
•
Gene
AT3G04530 | locus:2100875 | PPCK2 | phosphoenolpyruvate carboxylase kinase 2
Length: 1323  
Chromosome Location: Chr3: 1221422-1222744
Organism . Short Name: A. thaliana
TAIR Computational Description: phosphoenolpyruvate carboxylase kinase 2;(source:Araport11)
TAIR Curator Summary: Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light and is responsive to both phosphate (Pi) and phosphite (Phi) in shoots.
TAIR Short Description: phosphoenolpyruvate carboxylase kinase 2
TAIR Aliases: ATPPCK2, PEPCK2, PPCK2
•
•
•
•
•
Gene
AT4G22470 | locus:2127460 | AT4G22470 | -
Length: 1317  
Chromosome Location: Chr4: 11840134-11841450
Organism . Short Name: A. thaliana
TAIR Computational Description: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein;(source:Araport11)
TAIR Curator Summary: Encodes a hybrid proline-rich protein that contains two tandem PRD-8CMs (proline-rich domain-eight cysteine motif). Its expression is induced by JA and certain pathogens. This pattern of induction, combined with overexpression and RNAi induced phenotypes, suggests involvement in defense response to pathogens.
TAIR Short Description: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
TAIR Aliases: AtDHyPRP1, DHyPRP1
•
•
•
•
•
Gene
AT5G18620 | locus:2182978 | CHR17 | chromatin remodeling factor17
Length: 6480  
Chromosome Location: Chr5: 6195689-6202168
Organism . Short Name: A. thaliana
TAIR Computational Description: chromatin remodeling factor17;(source:Araport11)
TAIR Curator Summary: Encodes a member of the A. thaliana imitation switch (AtISWI) subfamily of chromatin remodeling factors. Double mutation in CHR17 and CHR11 results in the loss of the evenly spaced nucleosome pattern in gene bodies, but does not affect nucleosome density.
TAIR Short Description: chromatin remodeling factor17
TAIR Aliases: CHR17
•
•
•
•
•
Gene
AT1G13450 | locus:2009897 | GT-1 | GT-1
Length: 2623  
Chromosome Location: Chr1: 4612731-4615353
Organism . Short Name: A. thaliana
TAIR Computational Description: Homeodomain-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes GT-1, a plant transcription factor that binds to one of the cis-acting elements, BoxII, which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.
TAIR Short Description: Homeodomain-like superfamily protein
TAIR Aliases: GT-1
•
•
•
•
•
Gene
AT2G41900 | locus:2064647 | OXS2 | OXIDATIVE STRESS 2
Length: 3652  
Chromosome Location: Chr2: 17490271-17493922
Organism . Short Name: A. thaliana
TAIR Computational Description: CCCH-type zinc finger protein with ARM repeat domain-containing protein;(source:Araport11)
TAIR Curator Summary: AtOXS2 specifcally entered the nuclear under salt stress. Te specifc nuclear localization of AtOXS2 could play a role in salt tolerance at the molecular level. Tese results implied that AtOXS2 might target some downstream cis-elements which are required for salt stress responses
TAIR Short Description: CCCH-type zinc finger protein with ARM repeat domain
TAIR Aliases: DEG9, OXS2, TZF7
•
•
•
•
•
Gene
AT3G16420 | locus:2088344 | PBP1 | PYK10-binding protein 1
Length: 1743  
Chromosome Location: Chr3: 5579290-5581032
Organism . Short Name: A. thaliana
TAIR Computational Description: PYK10-binding protein 1;(source:Araport11)
TAIR Curator Summary: The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests. The mRNA is cell-to-cell mobile.
TAIR Short Description: PYK10-binding protein 1
TAIR Aliases: JAL30, PBP1, PBPI
•
•
•
•
•
GO Term
GO:0009954 | proximal/distal pattern formation
Description: The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end).
•
•
•
•
•
GO Term
GO:0090659 | walking behavior
Description: The behavior of an organism relating to the progression of that organism along the ground by the process of lifting and setting down each leg.
•
•
•
•
•
GO Term
GO:0009956 | radial pattern formation
Description: The regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur.
•
•
•
•
•
GO Term
GO:0009955 | adaxial/abaxial pattern specification
Description: The regionalization process in which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
•
•
•
•
•
GO Term
GO:0097353 | centrolateral pattern formation
Description: The regionalization process in which the areas along the centrolateral axis are established that will lead to differences in cell differentiation, or in which cells interpret a specific environment.
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: locomotor gait pattern
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: kidney pattern formation
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: kidney pattern specification
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: metanephros pattern specification
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: metanephros pattern formation
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: mesonephros pattern formation
Type: synonym
•
•
•
•
•
Ontology Term Synonym
Ontology Term Synonym
Name: mesonephros pattern specification
Type: synonym
•
•
•
•
•





BAR logo CAGEF logo CAGEF logo Araport logo JCVI logo TACC logo

InterMine is funded by the and interoperation is funded by

© 2002 - 2021 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom