Genomics
Genome feature
| Region: |
transposable_element
|
Length: |
8407
 |
| Location: | Chr5:10705882-10714288 reverse strand | ||
Overlapping Features
Genome features that overlap coordinates of this TransposableElement
Exons: 2, Intergenic Regions: 3, mRNAs: 2, Transposable Element: 1, Transposable Element Genes: 2, Transposon Fragments: 4
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G28673:exon:1 |
2273
|
Chr5: 10706347-10708619 | Arabidopsis thaliana |
| AT5G28675:exon:1 |
3988
|
Chr5: 10708694-10712681 | Arabidopsis thaliana |
Intergenic Regions
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| intergenic_region_chrChr5_10701827..10706346 |
4520
|
Chr5: 10701827-10706346 | Arabidopsis thaliana |
| intergenic_region_chrChr5_10708620..10708693 |
74
|
Chr5: 10708620-10708693 | Arabidopsis thaliana |
| intergenic_region_chrChr5_10712682..10719126 |
6445
|
Chr5: 10712682-10719126 | Arabidopsis thaliana |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT5G28673.1 |
2273
|
Chr5: 10706347-10708619 |
| AT5G28675.1 |
3988
|
Chr5: 10708694-10712681 |
Transposable Elements
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5TE38995 |
5140
|
Chr5: 10708157-10713296 | Arabidopsis thaliana |
Transposable Element Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT5G28673 | locus:1006230496 | AT5G28673 |
2273
|
Chr5: 10706347-10708619 | A. thaliana | transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.1e-40 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10) | NULL | transposable element gene | ||
| AT5G28675 | locus:504955056 | AT5G28675 |
3988
|
Chr5: 10708694-10712681 | A. thaliana | transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.9e-257 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5TE38990:transposon_fragment:3 |
2274
|
Chr5: 10705882-10708155 | Arabidopsis thaliana |
| AT5TE38990:transposon_fragment:2 |
421
|
Chr5: 10713297-10713717 | Arabidopsis thaliana |
| AT5TE38990:transposon_fragment:1 |
551
|
Chr5: 10713738-10714288 | Arabidopsis thaliana |
| AT5TE38995:transposon_fragment:1 |
5140
|
Chr5: 10708157-10713296 | Arabidopsis thaliana |
