Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
Antisense lncRNA: 1, CDSs: 6, Exons: 9, Five Prime UTR: 1, Genes: 3, mRNAs: 2, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G63140:CDS:6 | 183 | Chr3: 23327006-23327188 | Arabidopsis thaliana |
AT3G63140:CDS:5 | 278 | Chr3: 23327267-23327544 | Arabidopsis thaliana |
AT3G63140:CDS:4 | 139 | Chr3: 23327616-23327754 | Arabidopsis thaliana |
AT3G63140:CDS:3 | 103 | Chr3: 23327822-23327924 | Arabidopsis thaliana |
AT3G63140:CDS:2 | 122 | Chr3: 23328027-23328148 | Arabidopsis thaliana |
AT3G63140:CDS:1 | 396 | Chr3: 23328225-23328620 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G63130:exon:3 | 1828 | Chr3: 23325086-23326913 | Arabidopsis thaliana |
AT3G63130:exon:4 | 1885 | Chr3: 23325089-23326973 | Arabidopsis thaliana |
AT3G63140:exon:6 | 322 | Chr3: 23326867-23327188 | Arabidopsis thaliana |
AT3G63140:exon:5 | 278 | Chr3: 23327267-23327544 | Arabidopsis thaliana |
AT3G63140:exon:4 | 139 | Chr3: 23327616-23327754 | Arabidopsis thaliana |
AT3G63140:exon:3 | 103 | Chr3: 23327822-23327924 | Arabidopsis thaliana |
AT3G63140:exon:2 | 122 | Chr3: 23328027-23328148 | Arabidopsis thaliana |
AT3G63140:exon:1 | 565 | Chr3: 23328225-23328789 | Arabidopsis thaliana |
AT3G09905:exon:1 | 286 | Chr3: 23328322-23328607 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G63140:five_prime_UTR:1 | 169 | Chr3: 23328621-23328789 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G63130 | locus:2099207 | RANGAP1 | RAN GTPase activating protein 1 | 2495 | Chr3: 23324479-23326973 | A. thaliana | RAN GTPase activating protein 1;(source:Araport11) | Encodes a RAN GTPase activating protein involved in nuclear import, cell plate formation and mitotic spindle formation. Associates with nuclear envelope membranes. | RAN GTPase activating protein 1 | ATRANGAP1, RANGAP1 |
AT3G63140 | locus:2099222 | CSP41A | chloroplast stem-loop binding protein of 41 kDa | 1923 | Chr3: 23326867-23328789 | A. thaliana | chloroplast stem-loop binding protein of 41 kDa;(source:Araport11) | Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation. | chloroplast stem-loop binding protein of 41 kDa | CSP41A |
AT3G09905 | AT3G09905 | 286 | Chr3: 23328322-23328607 | A. thaliana | Natural antisense transcript overlaps with AT3G63140;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G63130.1 | 2182 | Chr3: 23324479-23326913 |
AT3G63130.2 | 2109 | Chr3: 23324609-23326973 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G63130:three_prime_UTR:1 | 198 | Chr3: 23326716-23326913 | Arabidopsis thaliana |
AT3G63130:three_prime_UTR:2 | 258 | Chr3: 23326716-23326973 | Arabidopsis thaliana |
AT3G63140:three_prime_UTR:1 | 139 | Chr3: 23326867-23327005 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE95080 | 150 | Chr3: 23328461-23328610 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE95080:transposon_fragment:1 | 150 | Chr3: 23328461-23328610 | Arabidopsis thaliana |