Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
Antisense lncRNA: 1, CDSs: 12, Exons: 12, Five Prime UTRs: 5, Genes: 3, mRNAs: 5, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54790:CDS:5 | 66 | Chr3: 20281830-20281895 | Arabidopsis thaliana |
AT3G54790:CDS:4 | 1824 | Chr3: 20281990-20283813 | Arabidopsis thaliana |
AT3G54790:CDS:3 | 117 | Chr3: 20283895-20284011 | Arabidopsis thaliana |
AT3G54790:CDS:2 | 168 | Chr3: 20284088-20284255 | Arabidopsis thaliana |
AT3G54790:CDS:5.1 | 66 | Chr3: 20281830-20281895 | Arabidopsis thaliana |
AT3G54790:CDS:4.1 | 1824 | Chr3: 20281990-20283813 | Arabidopsis thaliana |
AT3G54790:CDS:3.1 | 117 | Chr3: 20283895-20284011 | Arabidopsis thaliana |
AT3G54790:CDS:1 | 276 | Chr3: 20284088-20284363 | Arabidopsis thaliana |
AT3G54790:CDS:5.2 | 66 | Chr3: 20281830-20281895 | Arabidopsis thaliana |
AT3G54790:CDS:4.2 | 1824 | Chr3: 20281990-20283813 | Arabidopsis thaliana |
AT3G54790:CDS:3.2 | 117 | Chr3: 20283895-20284011 | Arabidopsis thaliana |
AT3G54790:CDS:1.1 | 276 | Chr3: 20284088-20284363 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54780:exon:10 | 925 | Chr3: 20280620-20281544 | Arabidopsis thaliana |
AT3G54780:exon:8 | 1934 | Chr3: 20279618-20281551 | Arabidopsis thaliana |
AT3G54790:exon:5 | 241 | Chr3: 20284088-20284328 | Arabidopsis thaliana |
AT3G54790:exon:2 | 192 | Chr3: 20284935-20285126 | Arabidopsis thaliana |
AT3G54790:exon:9 | 361 | Chr3: 20281535-20281895 | Arabidopsis thaliana |
AT3G54790:exon:4 | 288 | Chr3: 20284088-20284375 | Arabidopsis thaliana |
AT3G54790:exon:1 | 356 | Chr3: 20284935-20285290 | Arabidopsis thaliana |
AT3G54790:exon:8 | 66 | Chr3: 20281830-20281895 | Arabidopsis thaliana |
AT3G54790:exon:7 | 1824 | Chr3: 20281990-20283813 | Arabidopsis thaliana |
AT3G54790:exon:6 | 117 | Chr3: 20283895-20284011 | Arabidopsis thaliana |
AT3G54790:exon:3 | 314 | Chr3: 20284088-20284401 | Arabidopsis thaliana |
AT3G08425:exon:1 | 408 | Chr3: 20284353-20284760 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54790:five_prime_UTR:5 | 73 | Chr3: 20284256-20284328 | Arabidopsis thaliana |
AT3G54790:five_prime_UTR:2 | 192 | Chr3: 20284935-20285126 | Arabidopsis thaliana |
AT3G54790:five_prime_UTR:4 | 12 | Chr3: 20284364-20284375 | Arabidopsis thaliana |
AT3G54790:five_prime_UTR:1 | 356 | Chr3: 20284935-20285290 | Arabidopsis thaliana |
AT3G54790:five_prime_UTR:3 | 38 | Chr3: 20284364-20284401 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G54780 | locus:2102445 | AT3G54780 | 2754 | Chr3: 20278798-20281551 | A. thaliana | Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11) | NULL | Zinc finger (C3HC4-type RING finger) family protein | ||
AT3G54790 | locus:2102455 | AT3G54790 | 3756 | Chr3: 20281535-20285290 | A. thaliana | ARM repeat superfamily protein;(source:Araport11) | NULL | ARM repeat superfamily protein | PUB3 | |
AT3G08425 | AT3G08425 | 605 | Chr3: 20284353-20284957 | A. thaliana | Natural antisense transcript overlaps with AT3G54790;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G54780.3 | 2163 | Chr3: 20278839-20281544 |
AT3G54780.2 | 2110 | Chr3: 20278889-20281544 |
AT3G54780.1 | 2181 | Chr3: 20278954-20281551 |
AT3G54790.2 | 2735 | Chr3: 20281535-20285126 |
AT3G54790.3 | 2321 | Chr3: 20281830-20284401 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54780:three_prime_UTR:1 | 115 | Chr3: 20281430-20281544 | Arabidopsis thaliana |
AT3G54780:three_prime_UTR:2 | 122 | Chr3: 20281430-20281551 | Arabidopsis thaliana |
AT3G54790:three_prime_UTR:1 | 295 | Chr3: 20281535-20281829 | Arabidopsis thaliana |