Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposonFragment
CDS: 1, Exons: 2, Gene: 1, Intergenic Regions: 2, mRNAs: 2, Transposable Element: 1, Transposable Element Gene: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G18830:CDS:1 | 198 | Chr2: 8156204-8156401 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G18820:exon:1 | 5105 | Chr2: 8150995-8156099 | Arabidopsis thaliana |
AT2G18830:exon:1 | 198 | Chr2: 8156204-8156401 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G18830 | locus:2044445 | AT2G18830 | 198 | Chr2: 8156204-8156401 | A. thaliana | RNA-binding (RRM/RBD/RNP motif) family protein;(source:Araport11) | NULL | NULL |
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr2_8149470..8150994 | 1525 | Chr2: 8149470-8150994 | Arabidopsis thaliana |
intergenic_region_chrChr2_8156100..8156203 | 104 | Chr2: 8156100-8156203 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G18820.1 | 5105 | Chr2: 8150995-8156099 |
AT2G18830.1 | 198 | Chr2: 8156204-8156401 |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE33890 | 5318 | Chr2: 8150903-8156220 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G18820 | locus:2044510 | AT2G18820 | 5105 | Chr2: 8150995-8156099 | A. thaliana | transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.7e-38 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10) | NULL | transposable element gene |